Strain Fitness in Variovorax sp. SCN45 around GFF5449

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
78,544	+				+0.5
78,544	+				+0.3
78,544	+				-0.4
78,544	+				+1.6
78,544	+				-2.1
78,544	+				-2.3
78,545	-				+2.7
78,545	-				-0.8
78,545	-				+0.5
78,545	-				-0.1
78,545	-				+0.7
78,545	-				-2.2
78,545	-				+0.7
78,545	-				-1.2
78,545	-				-0.5
78,545	-				+0.1
79,116	-				+0.6
79,138	+				-0.8
79,138	+				-0.5
79,138	+				-0.4
79,138	+				-0.5
79,138	+				-1.8
79,139	-				-1.0
79,139	-				+0.0
79,139	-				+0.2
79,139	-				-1.1
79,139	-				+1.7
79,139	-				-1.5
79,139	-				-0.9
79,139	-				-2.9
79,142	+				-0.5
79,142	+				+0.5
79,142	+				-2.4
79,142	+				-1.3
79,142	+				-1.3
79,142	+				+1.4
79,142	+				+0.2
79,142	+				+0.1
79,142	+				+1.2
79,142	+				+0.8
79,142	+				-0.8
79,142	+				+0.3
79,142	+				+1.8
79,142	+				+0.6
79,142	+				-0.3
79,142	+				-0.8
79,142	+				+0.6
79,143	-				-0.2
79,143	-				+0.5
79,143	-				+0.5
79,143	-				-0.2
79,143	-				+0.0
79,143	-				+0.9
79,143	-				-0.1
79,143	-				+0.0
79,143	-				-0.8
79,173	+				-2.4
79,174	-				+2.8
79,174	-				-1.0
79,397	+		GFF5449	0.23	-0.7
79,397	+		GFF5449	0.23	-0.1
79,397	+		GFF5449	0.23	-0.6
79,398	-		GFF5449	0.23	-0.6
79,398	-		GFF5449	0.23	-1.1
79,398	-		GFF5449	0.23	+0.8
79,398	-		GFF5449	0.23	-0.9
79,398	-		GFF5449	0.23	+1.0
79,398	-		GFF5449	0.23	+0.9
79,398	-		GFF5449	0.23	-2.3
79,398	-		GFF5449	0.23	-0.8
79,700	+		GFF5449	0.69	-0.3
79,700	+		GFF5449	0.69	-0.0
79,700	+		GFF5449	0.69	-0.0
79,700	+		GFF5449	0.69	+1.8
79,700	+		GFF5449	0.69	+1.1
79,700	+		GFF5449	0.69	-1.9
79,700	+		GFF5449	0.69	-0.4
79,700	+		GFF5449	0.69	+1.5
79,701	-		GFF5449	0.69	+0.6
79,743	+		GFF5449	0.75	-0.7
79,743	+		GFF5449	0.75	-0.8
79,744	-		GFF5449	0.75	-0.3
79,744	-		GFF5449	0.75	-0.3
79,744	-		GFF5449	0.75	-0.4
79,821	+		GFF5449	0.87	-0.0
79,822	-		GFF5449	0.87	+0.0
79,892	-				-2.0
79,892	-				+0.0
79,892	-				-1.9
79,945	+				-1.3
79,945	+				-1.8
79,945	+				-0.5
79,945	+				-2.2
79,945	+				+0.2
79,945	+				+0.9
79,945	+				+0.7
79,945	+				-0.3
79,945	+				-0.2
79,945	+				-1.1
79,945	+				+0.5
79,945	+				+1.5
79,945	+				+0.9
79,945	+				-1.0
79,946	-				+0.9
79,946	-				-2.3
79,946	-				-0.3
79,946	-				+0.2
79,946	-				-0.9
79,946	-				-0.0
79,946	-				+2.1
79,946	-				+2.3
79,946	-				-2.9
79,946	-				+1.6
79,946	-				-0.3
79,946	-				-0.9
79,946	-				+2.6
79,968	+				-1.5
79,968	+				-2.0
79,969	-				+0.2
79,993	+				-1.8
80,045	-				+1.3
80,092	+				-2.0
80,092	+				-2.9
80,092	+				-0.2
80,092	+				-0.1
80,093	-				+0.3
80,093	-				-0.6
80,093	-				-2.5
80,093	-				-2.1
80,093	-				+0.4
80,281	+				-1.4
80,281	+				-3.4
80,281	+				-0.5
80,281	+				-2.2
80,281	+				-0.3
80,281	+				-1.2
80,281	+				+2.5
80,281	+				+0.5
80,281	+				-0.5
80,281	+				+0.8
80,282	-				-1.6
80,282	-				-0.3
80,282	-				+0.6
80,282	-				+2.5
80,282	-				-3.1
80,282	-				+1.4
80,595	+		GFF5451	0.29	+1.5
80,643	+		GFF5451	0.33	-2.7
80,643	+		GFF5451	0.33	+0.2
80,643	+		GFF5451	0.33	+0.6
80,643	+		GFF5451	0.33	-1.0
80,643	+		GFF5451	0.33	-1.5
80,643	+		GFF5451	0.33	+0.1
80,644	-		GFF5451	0.33	-0.5
80,644	-		GFF5451	0.33	+0.5
80,644	-		GFF5451	0.33	+1.2
80,644	-		GFF5451	0.33	+0.0
80,644	-		GFF5451	0.33	-0.4
80,644	-		GFF5451	0.33	-1.0
80,644	-		GFF5451	0.33	-1.8
80,646	+		GFF5451	0.33	-0.8
80,646	+		GFF5451	0.33	-1.0
80,646	+		GFF5451	0.33	-1.4
80,646	+		GFF5451	0.33	-2.3
80,646	+		GFF5451	0.33	+2.5
80,646	+		GFF5451	0.33	-0.5
80,646	+		GFF5451	0.33	+2.5
80,647	-		GFF5451	0.33	-0.7
80,647	-		GFF5451	0.33	-0.8
80,647	-		GFF5451	0.33	-0.4
80,647	-		GFF5451	0.33	-2.0
80,647	-		GFF5451	0.33	+0.2
80,647	-		GFF5451	0.33	-2.2
80,647	-		GFF5451	0.33	-1.2
80,647	-		GFF5451	0.33	+0.2
80,658	+		GFF5451	0.34	-0.2
80,658	+		GFF5451	0.34	-0.5
80,658	+		GFF5451	0.34	-2.3
80,658	+		GFF5451	0.34	+0.2
80,658	+		GFF5451	0.34	+1.5
80,658	+		GFF5451	0.34	-0.7
80,658	+		GFF5451	0.34	-0.3
80,658	+		GFF5451	0.34	-0.7
80,659	-		GFF5451	0.34	+0.5
80,659	-		GFF5451	0.34	+2.5
80,659	-		GFF5451	0.34	-1.0
80,659	-		GFF5451	0.34	+0.2
80,659	-		GFF5451	0.34	-1.2
80,659	-		GFF5451	0.34	-1.2
80,659	-		GFF5451	0.34	+0.5
80,703	+		GFF5451	0.38	+0.5
80,703	+		GFF5451	0.38	-1.5
80,703	+		GFF5451	0.38	+0.1
80,704	-		GFF5451	0.38	+0.9
80,704	-		GFF5451	0.38	-2.1
80,704	-		GFF5451	0.38	-3.7
80,704	-		GFF5451	0.38	-1.2
80,704	-		GFF5451	0.38	-2.0
80,704	-		GFF5451	0.38	+0.9
80,742	+		GFF5451	0.42	+2.4
80,742	+		GFF5451	0.42	+0.5
80,742	+		GFF5451	0.42	+0.9
80,743	-		GFF5451	0.42	-0.3
80,887	-		GFF5451	0.55	+0.5