Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5429 and GFF5430 are separated by 16 nucleotides GFF5430 and GFF5431 are separated by 132 nucleotides
GFF5429 - Iron(III) dicitrate transport protein FecA, at 52,222 to 54,393
GFF5429
GFF5430 - Uncharacterized iron-regulated membrane protein; Iron-uptake factor PiuB, at 54,410 to 55,522
GFF5430
GFF5431 - Adenylosuccinate lyase (EC 4.3.2.2) @ SAICAR lyase (EC 4.3.2.2), at 55,655 to 57,034
GFF5431
Position (kb) 54
55
56 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 53.441 kb on + strand, within GFF5429 at 53.441 kb on + strand, within GFF5429 at 53.441 kb on + strand, within GFF5429 at 53.441 kb on + strand, within GFF5429 at 53.442 kb on - strand, within GFF5429 at 53.442 kb on - strand, within GFF5429 at 53.442 kb on - strand, within GFF5429 at 53.442 kb on - strand, within GFF5429 at 53.442 kb on - strand, within GFF5429 at 53.442 kb on - strand, within GFF5429 at 53.442 kb on - strand, within GFF5429 at 53.442 kb on - strand, within GFF5429 at 53.444 kb on + strand, within GFF5429 at 53.444 kb on + strand, within GFF5429 at 53.444 kb on + strand, within GFF5429 at 53.444 kb on + strand, within GFF5429 at 53.444 kb on + strand, within GFF5429 at 53.444 kb on + strand, within GFF5429 at 53.444 kb on + strand, within GFF5429 at 53.444 kb on + strand, within GFF5429 at 53.444 kb on + strand, within GFF5429 at 53.444 kb on + strand, within GFF5429 at 53.444 kb on + strand, within GFF5429 at 53.445 kb on - strand, within GFF5429 at 53.445 kb on - strand, within GFF5429 at 53.445 kb on - strand, within GFF5429 at 53.445 kb on - strand, within GFF5429 at 53.445 kb on - strand, within GFF5429 at 53.445 kb on - strand, within GFF5429 at 53.445 kb on - strand, within GFF5429 at 53.445 kb on - strand, within GFF5429 at 53.445 kb on - strand, within GFF5429 at 53.445 kb on - strand, within GFF5429 at 53.445 kb on - strand, within GFF5429 at 53.463 kb on - strand, within GFF5429 at 53.486 kb on + strand, within GFF5429 at 53.486 kb on + strand, within GFF5429 at 53.486 kb on + strand, within GFF5429 at 53.486 kb on + strand, within GFF5429 at 53.486 kb on + strand, within GFF5429 at 53.486 kb on + strand, within GFF5429 at 53.487 kb on - strand, within GFF5429 at 53.487 kb on - strand, within GFF5429 at 53.487 kb on - strand, within GFF5429 at 53.729 kb on + strand, within GFF5429 at 53.729 kb on + strand, within GFF5429 at 53.729 kb on + strand, within GFF5429 at 53.730 kb on - strand, within GFF5429 at 53.906 kb on + strand, within GFF5429 at 54.002 kb on + strand, within GFF5429 at 54.002 kb on + strand, within GFF5429 at 54.002 kb on + strand, within GFF5429 at 54.002 kb on + strand, within GFF5429 at 54.002 kb on + strand, within GFF5429 at 54.002 kb on + strand, within GFF5429 at 54.002 kb on + strand, within GFF5429 at 54.003 kb on - strand, within GFF5429 at 54.003 kb on - strand, within GFF5429 at 54.003 kb on - strand, within GFF5429 at 54.003 kb on - strand, within GFF5429 at 54.003 kb on - strand, within GFF5429 at 54.003 kb on - strand, within GFF5429 at 54.003 kb on - strand, within GFF5429 at 54.411 kb on + strand at 54.411 kb on + strand at 54.411 kb on + strand at 54.411 kb on + strand at 54.411 kb on + strand at 54.411 kb on + strand at 54.411 kb on + strand at 54.411 kb on + strand at 54.411 kb on + strand at 54.411 kb on + strand at 54.412 kb on - strand at 54.412 kb on - strand at 54.412 kb on - strand at 54.412 kb on - strand at 54.412 kb on - strand at 54.412 kb on - strand at 54.412 kb on - strand at 54.412 kb on - strand at 54.412 kb on - strand at 54.412 kb on - strand at 54.412 kb on - strand at 54.412 kb on - strand at 54.412 kb on - strand at 54.573 kb on + strand, within GFF5430 at 54.573 kb on + strand, within GFF5430 at 54.574 kb on - strand, within GFF5430 at 54.574 kb on - strand, within GFF5430 at 54.660 kb on - strand, within GFF5430 at 54.747 kb on + strand, within GFF5430 at 54.747 kb on + strand, within GFF5430 at 54.747 kb on + strand, within GFF5430 at 54.748 kb on - strand, within GFF5430 at 54.748 kb on - strand, within GFF5430 at 54.748 kb on - strand, within GFF5430 at 54.748 kb on - strand, within GFF5430 at 54.748 kb on - strand, within GFF5430 at 54.748 kb on - strand, within GFF5430 at 54.748 kb on - strand, within GFF5430 at 54.748 kb on - strand, within GFF5430 at 54.748 kb on - strand, within GFF5430 at 54.748 kb on - strand, within GFF5430 at 54.909 kb on + strand, within GFF5430 at 54.909 kb on + strand, within GFF5430 at 54.909 kb on + strand, within GFF5430 at 54.909 kb on + strand, within GFF5430 at 54.909 kb on + strand, within GFF5430 at 54.909 kb on + strand, within GFF5430 at 54.909 kb on + strand, within GFF5430 at 54.909 kb on + strand, within GFF5430 at 54.909 kb on + strand, within GFF5430 at 54.909 kb on + strand, within GFF5430 at 54.909 kb on + strand, within GFF5430 at 54.909 kb on + strand, within GFF5430 at 54.910 kb on - strand, within GFF5430 at 54.910 kb on - strand, within GFF5430 at 54.910 kb on - strand, within GFF5430 at 54.910 kb on - strand, within GFF5430 at 54.910 kb on - strand, within GFF5430 at 54.910 kb on - strand, within GFF5430 at 54.910 kb on - strand, within GFF5430 at 54.910 kb on - strand, within GFF5430 at 54.910 kb on - strand, within GFF5430 at 54.910 kb on - strand, within GFF5430 at 54.910 kb on - strand, within GFF5430 at 54.910 kb on - strand, within GFF5430 at 54.910 kb on - strand, within GFF5430 at 55.077 kb on + strand, within GFF5430 at 55.077 kb on + strand, within GFF5430 at 55.077 kb on + strand, within GFF5430 at 55.077 kb on + strand, within GFF5430 at 55.077 kb on + strand, within GFF5430 at 55.077 kb on + strand, within GFF5430 at 55.077 kb on + strand, within GFF5430 at 55.077 kb on + strand, within GFF5430 at 55.077 kb on + strand, within GFF5430 at 55.078 kb on - strand, within GFF5430 at 55.078 kb on - strand, within GFF5430 at 55.078 kb on - strand, within GFF5430 at 55.078 kb on - strand, within GFF5430 at 55.078 kb on - strand, within GFF5430 at 55.078 kb on - strand, within GFF5430 at 55.078 kb on - strand, within GFF5430 at 55.078 kb on - strand, within GFF5430 at 55.158 kb on + strand, within GFF5430 at 55.158 kb on + strand, within GFF5430 at 55.158 kb on + strand, within GFF5430 at 55.158 kb on + strand, within GFF5430 at 55.158 kb on + strand, within GFF5430 at 55.158 kb on + strand, within GFF5430 at 55.158 kb on + strand, within GFF5430 at 55.158 kb on + strand, within GFF5430 at 55.158 kb on + strand, within GFF5430 at 55.158 kb on + strand, within GFF5430 at 55.158 kb on + strand, within GFF5430 at 55.158 kb on + strand, within GFF5430 at 55.158 kb on + strand, within GFF5430 at 55.158 kb on + strand, within GFF5430 at 55.158 kb on + strand, within GFF5430 at 55.159 kb on - strand, within GFF5430 at 55.159 kb on - strand, within GFF5430 at 55.159 kb on - strand, within GFF5430 at 55.159 kb on - strand, within GFF5430 at 55.159 kb on - strand, within GFF5430 at 55.159 kb on - strand, within GFF5430 at 55.215 kb on + strand, within GFF5430 at 55.215 kb on + strand, within GFF5430 at 55.216 kb on - strand, within GFF5430 at 55.216 kb on - strand, within GFF5430 at 55.216 kb on - strand, within GFF5430 at 55.216 kb on - strand, within GFF5430 at 55.216 kb on - strand, within GFF5430 at 55.241 kb on + strand, within GFF5430 at 55.396 kb on - strand, within GFF5430 at 55.396 kb on - strand, within GFF5430 at 55.548 kb on + strand at 55.548 kb on + strand at 55.638 kb on + strand at 55.638 kb on + strand at 55.639 kb on - strand at 55.639 kb on - strand at 55.644 kb on + strand at 55.645 kb on - strand at 55.656 kb on + strand at 55.656 kb on + strand at 55.656 kb on + strand at 55.656 kb on + strand at 55.656 kb on + strand at 55.656 kb on + strand at 55.656 kb on + strand at 55.656 kb on + strand at 55.657 kb on - strand at 55.657 kb on - strand at 55.657 kb on - strand at 55.657 kb on - strand at 55.657 kb on - strand at 55.657 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 53,441 + GFF5429 0.56 -1.2 53,441 + GFF5429 0.56 -0.7 53,441 + GFF5429 0.56 -0.7 53,441 + GFF5429 0.56 -0.1 53,442 - GFF5429 0.56 +0.6 53,442 - GFF5429 0.56 -2.3 53,442 - GFF5429 0.56 -0.3 53,442 - GFF5429 0.56 +0.3 53,442 - GFF5429 0.56 -1.1 53,442 - GFF5429 0.56 -0.3 53,442 - GFF5429 0.56 -1.6 53,442 - GFF5429 0.56 -1.3 53,444 + GFF5429 0.56 -1.3 53,444 + GFF5429 0.56 -1.0 53,444 + GFF5429 0.56 -1.9 53,444 + GFF5429 0.56 -2.8 53,444 + GFF5429 0.56 -0.7 53,444 + GFF5429 0.56 -1.9 53,444 + GFF5429 0.56 +0.2 53,444 + GFF5429 0.56 -1.6 53,444 + GFF5429 0.56 -0.9 53,444 + GFF5429 0.56 -1.0 53,444 + GFF5429 0.56 -1.5 53,445 - GFF5429 0.56 +1.6 53,445 - GFF5429 0.56 -1.2 53,445 - GFF5429 0.56 +0.4 53,445 - GFF5429 0.56 -0.8 53,445 - GFF5429 0.56 -0.5 53,445 - GFF5429 0.56 -1.6 53,445 - GFF5429 0.56 +0.5 53,445 - GFF5429 0.56 +0.5 53,445 - GFF5429 0.56 -0.2 53,445 - GFF5429 0.56 +0.2 53,445 - GFF5429 0.56 -1.8 53,463 - GFF5429 0.57 -0.6 53,486 + GFF5429 0.58 +0.5 53,486 + GFF5429 0.58 +1.9 53,486 + GFF5429 0.58 +1.5 53,486 + GFF5429 0.58 -1.8 53,486 + GFF5429 0.58 +0.2 53,486 + GFF5429 0.58 -0.3 53,487 - GFF5429 0.58 -0.9 53,487 - GFF5429 0.58 -1.2 53,487 - GFF5429 0.58 +0.2 53,729 + GFF5429 0.69 -2.5 53,729 + GFF5429 0.69 +1.1 53,729 + GFF5429 0.69 +0.3 53,730 - GFF5429 0.69 -1.6 53,906 + GFF5429 0.78 -0.7 54,002 + GFF5429 0.82 -0.1 54,002 + GFF5429 0.82 -1.5 54,002 + GFF5429 0.82 -1.6 54,002 + GFF5429 0.82 -0.8 54,002 + GFF5429 0.82 -0.5 54,002 + GFF5429 0.82 -1.0 54,002 + GFF5429 0.82 +0.9 54,003 - GFF5429 0.82 +1.6 54,003 - GFF5429 0.82 +2.5 54,003 - GFF5429 0.82 -0.1 54,003 - GFF5429 0.82 +0.0 54,003 - GFF5429 0.82 -1.8 54,003 - GFF5429 0.82 -0.3 54,003 - GFF5429 0.82 +1.3 54,411 + -3.0 54,411 + -0.4 54,411 + -1.7 54,411 + -0.5 54,411 + +1.0 54,411 + +0.3 54,411 + +0.3 54,411 + -1.2 54,411 + -1.5 54,411 + -0.1 54,412 - +1.5 54,412 - +1.9 54,412 - +1.4 54,412 - -1.0 54,412 - +1.0 54,412 - -1.7 54,412 - -0.8 54,412 - -2.1 54,412 - -0.5 54,412 - -1.2 54,412 - -1.0 54,412 - -1.8 54,412 - +0.5 54,573 + GFF5430 0.15 -0.3 54,573 + GFF5430 0.15 +0.1 54,574 - GFF5430 0.15 -1.0 54,574 - GFF5430 0.15 -1.0 54,660 - GFF5430 0.22 -0.7 54,747 + GFF5430 0.30 -2.8 54,747 + GFF5430 0.30 -0.3 54,747 + GFF5430 0.30 -0.3 54,748 - GFF5430 0.30 -2.0 54,748 - GFF5430 0.30 +0.9 54,748 - GFF5430 0.30 -0.7 54,748 - GFF5430 0.30 -1.7 54,748 - GFF5430 0.30 +0.6 54,748 - GFF5430 0.30 -1.3 54,748 - GFF5430 0.30 -2.8 54,748 - GFF5430 0.30 -0.5 54,748 - GFF5430 0.30 -1.3 54,748 - GFF5430 0.30 +0.5 54,909 + GFF5430 0.45 -0.8 54,909 + GFF5430 0.45 -2.6 54,909 + GFF5430 0.45 +0.5 54,909 + GFF5430 0.45 +1.3 54,909 + GFF5430 0.45 +0.6 54,909 + GFF5430 0.45 +0.7 54,909 + GFF5430 0.45 +1.5 54,909 + GFF5430 0.45 -1.7 54,909 + GFF5430 0.45 -2.9 54,909 + GFF5430 0.45 +3.2 54,909 + GFF5430 0.45 -2.1 54,909 + GFF5430 0.45 -1.1 54,910 - GFF5430 0.45 -1.6 54,910 - GFF5430 0.45 -1.1 54,910 - GFF5430 0.45 -2.0 54,910 - GFF5430 0.45 -0.8 54,910 - GFF5430 0.45 -0.4 54,910 - GFF5430 0.45 -1.3 54,910 - GFF5430 0.45 +1.5 54,910 - GFF5430 0.45 +0.9 54,910 - GFF5430 0.45 -0.6 54,910 - GFF5430 0.45 -1.3 54,910 - GFF5430 0.45 +1.3 54,910 - GFF5430 0.45 -0.2 54,910 - GFF5430 0.45 -0.8 55,077 + GFF5430 0.60 -0.7 55,077 + GFF5430 0.60 +1.0 55,077 + GFF5430 0.60 -1.6 55,077 + GFF5430 0.60 -2.8 55,077 + GFF5430 0.60 -2.4 55,077 + GFF5430 0.60 +1.0 55,077 + GFF5430 0.60 +0.1 55,077 + GFF5430 0.60 +0.4 55,077 + GFF5430 0.60 +2.0 55,078 - GFF5430 0.60 +1.2 55,078 - GFF5430 0.60 -0.8 55,078 - GFF5430 0.60 +0.5 55,078 - GFF5430 0.60 +0.2 55,078 - GFF5430 0.60 -0.7 55,078 - GFF5430 0.60 -0.2 55,078 - GFF5430 0.60 +0.8 55,078 - GFF5430 0.60 +1.5 55,158 + GFF5430 0.67 +1.0 55,158 + GFF5430 0.67 +1.8 55,158 + GFF5430 0.67 -0.3 55,158 + GFF5430 0.67 -1.8 55,158 + GFF5430 0.67 -1.0 55,158 + GFF5430 0.67 -0.7 55,158 + GFF5430 0.67 -0.8 55,158 + GFF5430 0.67 +0.2 55,158 + GFF5430 0.67 -0.5 55,158 + GFF5430 0.67 -1.1 55,158 + GFF5430 0.67 +1.5 55,158 + GFF5430 0.67 -0.5 55,158 + GFF5430 0.67 +0.6 55,158 + GFF5430 0.67 -0.2 55,158 + GFF5430 0.67 -1.1 55,159 - GFF5430 0.67 -0.1 55,159 - GFF5430 0.67 +1.7 55,159 - GFF5430 0.67 +0.2 55,159 - GFF5430 0.67 -1.3 55,159 - GFF5430 0.67 -0.9 55,159 - GFF5430 0.67 +0.3 55,215 + GFF5430 0.72 -0.3 55,215 + GFF5430 0.72 -0.2 55,216 - GFF5430 0.72 -0.7 55,216 - GFF5430 0.72 -2.0 55,216 - GFF5430 0.72 +0.3 55,216 - GFF5430 0.72 +0.7 55,216 - GFF5430 0.72 +0.2 55,241 + GFF5430 0.75 -0.5 55,396 - GFF5430 0.89 -4.1 55,396 - GFF5430 0.89 -0.2 55,548 + -2.5 55,548 + -0.8 55,638 + -0.8 55,638 + -1.7 55,639 - +1.2 55,639 - +1.2 55,644 + +0.5 55,645 - -2.9 55,656 + -2.6 55,656 + -1.4 55,656 + +1.0 55,656 + -2.0 55,656 + -0.2 55,656 + -1.8 55,656 + -1.3 55,656 + -0.7 55,657 - +0.7 55,657 - +0.7 55,657 - -3.5 55,657 - -0.7 55,657 - +0.4 55,657 - -0.8
Or see this region's nucleotide sequence