Strain Fitness in Variovorax sp. SCN45 around GFF507

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF505 and GFF506 are separated by 126 nucleotidesGFF506 and GFF507 are separated by 62 nucleotidesGFF507 and GFF508 overlap by 4 nucleotides GFF505 - no description, at 547,424 to 547,996 GFF505 GFF506 - hypothetical protein, at 548,123 to 548,629 GFF506 GFF507 - Hydrolase, alpha/beta fold family, at 548,692 to 549,585 GFF507 GFF508 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 549,582 to 550,649 GFF508 Position (kb) 548 549 550Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 547.707 kb on + strand, within GFF505at 547.707 kb on + strand, within GFF505at 547.707 kb on + strand, within GFF505at 547.707 kb on + strand, within GFF505at 547.708 kb on - strand, within GFF505at 547.708 kb on - strand, within GFF505at 547.708 kb on - strand, within GFF505at 547.708 kb on - strand, within GFF505at 547.708 kb on - strand, within GFF505at 547.708 kb on - strand, within GFF505at 547.716 kb on + strand, within GFF505at 547.717 kb on - strand, within GFF505at 547.717 kb on - strand, within GFF505at 547.717 kb on - strand, within GFF505at 547.717 kb on - strand, within GFF505at 547.717 kb on - strand, within GFF505at 547.764 kb on + strand, within GFF505at 547.764 kb on + strand, within GFF505at 547.764 kb on + strand, within GFF505at 547.764 kb on + strand, within GFF505at 547.764 kb on + strand, within GFF505at 547.765 kb on - strand, within GFF505at 547.765 kb on - strand, within GFF505at 547.765 kb on - strand, within GFF505at 547.765 kb on - strand, within GFF505at 547.765 kb on - strand, within GFF505at 547.998 kb on + strandat 548.139 kb on + strandat 548.140 kb on - strandat 548.140 kb on - strandat 548.140 kb on - strandat 548.184 kb on + strand, within GFF506at 548.185 kb on - strand, within GFF506at 548.235 kb on + strand, within GFF506at 548.613 kb on + strandat 548.613 kb on + strandat 548.613 kb on + strandat 548.613 kb on + strandat 548.613 kb on + strandat 548.613 kb on + strandat 548.614 kb on - strandat 548.921 kb on + strand, within GFF507at 548.921 kb on + strand, within GFF507at 548.921 kb on + strand, within GFF507at 548.921 kb on + strand, within GFF507at 548.921 kb on + strand, within GFF507at 548.922 kb on - strand, within GFF507at 548.967 kb on - strand, within GFF507at 549.059 kb on + strand, within GFF507at 549.122 kb on + strand, within GFF507at 549.261 kb on + strand, within GFF507at 549.261 kb on + strand, within GFF507at 549.261 kb on + strand, within GFF507at 549.261 kb on + strand, within GFF507at 549.261 kb on + strand, within GFF507at 549.323 kb on + strand, within GFF507at 549.324 kb on - strand, within GFF507at 549.338 kb on + strand, within GFF507at 549.338 kb on + strand, within GFF507at 549.338 kb on + strand, within GFF507at 549.338 kb on + strand, within GFF507at 549.338 kb on + strand, within GFF507at 549.338 kb on + strand, within GFF507at 549.338 kb on + strand, within GFF507at 549.338 kb on + strand, within GFF507at 549.339 kb on - strand, within GFF507at 549.339 kb on - strand, within GFF507at 549.339 kb on - strand, within GFF507at 549.339 kb on - strand, within GFF507at 549.339 kb on - strand, within GFF507at 549.339 kb on - strand, within GFF507at 549.545 kb on + strandat 549.546 kb on - strandat 549.631 kb on + strandat 549.631 kb on + strandat 549.631 kb on + strandat 549.631 kb on + strandat 549.632 kb on - strandat 549.632 kb on - strandat 549.632 kb on - strandat 549.632 kb on - strandat 549.632 kb on - strandat 549.634 kb on + strandat 549.754 kb on + strand, within GFF508at 549.754 kb on + strand, within GFF508at 549.755 kb on - strand, within GFF508at 549.799 kb on + strand, within GFF508at 549.799 kb on + strand, within GFF508at 549.800 kb on - strand, within GFF508at 549.883 kb on + strand, within GFF508at 549.884 kb on - strand, within GFF508at 549.958 kb on + strand, within GFF508at 549.958 kb on + strand, within GFF508at 549.959 kb on - strand, within GFF508at 549.959 kb on - strand, within GFF508at 550.093 kb on + strand, within GFF508at 550.093 kb on + strand, within GFF508at 550.093 kb on + strand, within GFF508at 550.093 kb on + strand, within GFF508at 550.093 kb on + strand, within GFF508at 550.093 kb on + strand, within GFF508at 550.094 kb on - strand, within GFF508at 550.094 kb on - strand, within GFF508at 550.094 kb on - strand, within GFF508at 550.096 kb on + strand, within GFF508at 550.096 kb on + strand, within GFF508at 550.096 kb on + strand, within GFF508at 550.096 kb on + strand, within GFF508at 550.096 kb on + strand, within GFF508at 550.097 kb on - strand, within GFF508at 550.097 kb on - strand, within GFF508at 550.411 kb on + strand, within GFF508at 550.412 kb on - strand, within GFF508at 550.463 kb on - strand, within GFF508

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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547,707 + GFF505 0.49 -0.6
547,707 + GFF505 0.49 +1.8
547,707 + GFF505 0.49 +0.4
547,707 + GFF505 0.49 -1.6
547,708 - GFF505 0.50 -0.1
547,708 - GFF505 0.50 +0.4
547,708 - GFF505 0.50 -1.4
547,708 - GFF505 0.50 -1.3
547,708 - GFF505 0.50 -2.5
547,708 - GFF505 0.50 -2.5
547,716 + GFF505 0.51 -0.3
547,717 - GFF505 0.51 -1.7
547,717 - GFF505 0.51 +0.3
547,717 - GFF505 0.51 -0.6
547,717 - GFF505 0.51 +0.1
547,717 - GFF505 0.51 +4.4
547,764 + GFF505 0.59 +0.7
547,764 + GFF505 0.59 -3.4
547,764 + GFF505 0.59 -1.5
547,764 + GFF505 0.59 -0.1
547,764 + GFF505 0.59 -0.8
547,765 - GFF505 0.60 -0.5
547,765 - GFF505 0.60 -0.7
547,765 - GFF505 0.60 +0.9
547,765 - GFF505 0.60 -1.1
547,765 - GFF505 0.60 -0.9
547,998 + +0.3
548,139 + -0.5
548,140 - -1.5
548,140 - -0.2
548,140 - -1.5
548,184 + GFF506 0.12 -1.7
548,185 - GFF506 0.12 -0.7
548,235 + GFF506 0.22 -2.1
548,613 + -1.2
548,613 + -0.5
548,613 + +0.6
548,613 + +0.1
548,613 + -0.3
548,613 + -1.9
548,614 - +0.3
548,921 + GFF507 0.26 -0.9
548,921 + GFF507 0.26 -2.5
548,921 + GFF507 0.26 -1.3
548,921 + GFF507 0.26 -0.8
548,921 + GFF507 0.26 +0.8
548,922 - GFF507 0.26 -1.1
548,967 - GFF507 0.31 -1.0
549,059 + GFF507 0.41 -1.0
549,122 + GFF507 0.48 +1.9
549,261 + GFF507 0.64 +0.9
549,261 + GFF507 0.64 +0.1
549,261 + GFF507 0.64 -0.6
549,261 + GFF507 0.64 -1.6
549,261 + GFF507 0.64 -1.1
549,323 + GFF507 0.71 -1.0
549,324 - GFF507 0.71 -1.6
549,338 + GFF507 0.72 -0.8
549,338 + GFF507 0.72 +0.9
549,338 + GFF507 0.72 -1.3
549,338 + GFF507 0.72 -1.9
549,338 + GFF507 0.72 +0.0
549,338 + GFF507 0.72 -1.6
549,338 + GFF507 0.72 +0.8
549,338 + GFF507 0.72 -0.3
549,339 - GFF507 0.72 -0.2
549,339 - GFF507 0.72 -0.2
549,339 - GFF507 0.72 +0.3
549,339 - GFF507 0.72 +0.0
549,339 - GFF507 0.72 +1.0
549,339 - GFF507 0.72 +0.3
549,545 + -0.5
549,546 - -1.6
549,631 + +2.3
549,631 + -0.7
549,631 + +0.5
549,631 + +2.2
549,632 - -0.2
549,632 - +2.1
549,632 - +0.3
549,632 - -1.2
549,632 - -1.8
549,634 + -1.2
549,754 + GFF508 0.16 +0.3
549,754 + GFF508 0.16 +0.8
549,755 - GFF508 0.16 +0.6
549,799 + GFF508 0.20 +0.1
549,799 + GFF508 0.20 -0.2
549,800 - GFF508 0.20 -1.9
549,883 + GFF508 0.28 -1.3
549,884 - GFF508 0.28 -0.5
549,958 + GFF508 0.35 -1.4
549,958 + GFF508 0.35 -0.8
549,959 - GFF508 0.35 -2.4
549,959 - GFF508 0.35 -0.3
550,093 + GFF508 0.48 -1.2
550,093 + GFF508 0.48 -2.0
550,093 + GFF508 0.48 +1.4
550,093 + GFF508 0.48 -1.2
550,093 + GFF508 0.48 -0.0
550,093 + GFF508 0.48 -0.5
550,094 - GFF508 0.48 +0.8
550,094 - GFF508 0.48 -0.5
550,094 - GFF508 0.48 -2.0
550,096 + GFF508 0.48 +1.0
550,096 + GFF508 0.48 -0.3
550,096 + GFF508 0.48 +0.6
550,096 + GFF508 0.48 -0.7
550,096 + GFF508 0.48 +0.6
550,097 - GFF508 0.48 +0.3
550,097 - GFF508 0.48 -1.6
550,411 + GFF508 0.78 +1.2
550,412 - GFF508 0.78 +0.4
550,463 - GFF508 0.82 -2.1

Or see this region's nucleotide sequence