Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5051 and GFF5052 are separated by 152 nucleotides GFF5052 and GFF5053 overlap by 4 nucleotides GFF5053 and GFF5054 are separated by 59 nucleotides
GFF5051 - MBL-fold metallohydrolase SPO0683, at 151,788 to 152,747
GFF5051
GFF5052 - FAD-dependent oxidoreductase SPO0682, at 152,900 to 154,540
GFF5052
GFF5053 - Uncharacterized protein SPO0681, at 154,537 to 154,749
GFF5053
GFF5054 - Homogentisate 1,2-dioxygenase (EC 1.13.11.5), at 154,809 to 156,119
GFF5054
Position (kb) 152
153
154
155 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 152.013 kb on + strand, within GFF5051 at 152.013 kb on + strand, within GFF5051 at 152.013 kb on + strand, within GFF5051 at 152.013 kb on + strand, within GFF5051 at 152.013 kb on + strand, within GFF5051 at 152.013 kb on + strand, within GFF5051 at 152.013 kb on + strand, within GFF5051 at 152.013 kb on + strand, within GFF5051 at 152.013 kb on + strand, within GFF5051 at 152.013 kb on + strand, within GFF5051 at 152.014 kb on - strand, within GFF5051 at 152.014 kb on - strand, within GFF5051 at 152.014 kb on - strand, within GFF5051 at 152.014 kb on - strand, within GFF5051 at 152.014 kb on - strand, within GFF5051 at 152.014 kb on - strand, within GFF5051 at 152.014 kb on - strand, within GFF5051 at 152.014 kb on - strand, within GFF5051 at 152.031 kb on + strand, within GFF5051 at 152.031 kb on + strand, within GFF5051 at 152.031 kb on + strand, within GFF5051 at 152.032 kb on - strand, within GFF5051 at 152.032 kb on - strand, within GFF5051 at 152.032 kb on - strand, within GFF5051 at 152.368 kb on - strand, within GFF5051 at 152.382 kb on + strand, within GFF5051 at 152.382 kb on + strand, within GFF5051 at 152.383 kb on - strand, within GFF5051 at 152.383 kb on - strand, within GFF5051 at 152.526 kb on + strand, within GFF5051 at 152.526 kb on + strand, within GFF5051 at 152.526 kb on + strand, within GFF5051 at 152.526 kb on + strand, within GFF5051 at 152.526 kb on + strand, within GFF5051 at 152.526 kb on + strand, within GFF5051 at 152.526 kb on + strand, within GFF5051 at 152.526 kb on + strand, within GFF5051 at 152.526 kb on + strand, within GFF5051 at 152.526 kb on + strand, within GFF5051 at 152.527 kb on - strand, within GFF5051 at 152.527 kb on - strand, within GFF5051 at 152.527 kb on - strand, within GFF5051 at 152.527 kb on - strand, within GFF5051 at 152.527 kb on - strand, within GFF5051 at 152.527 kb on - strand, within GFF5051 at 152.577 kb on + strand, within GFF5051 at 152.578 kb on - strand, within GFF5051 at 152.578 kb on - strand, within GFF5051 at 152.589 kb on + strand, within GFF5051 at 152.589 kb on + strand, within GFF5051 at 152.589 kb on + strand, within GFF5051 at 152.589 kb on + strand, within GFF5051 at 152.589 kb on + strand, within GFF5051 at 152.589 kb on + strand, within GFF5051 at 152.590 kb on - strand, within GFF5051 at 152.590 kb on - strand, within GFF5051 at 152.590 kb on - strand, within GFF5051 at 152.610 kb on + strand, within GFF5051 at 152.610 kb on + strand, within GFF5051 at 152.610 kb on + strand, within GFF5051 at 152.611 kb on - strand, within GFF5051 at 152.611 kb on - strand, within GFF5051 at 152.611 kb on - strand, within GFF5051 at 152.611 kb on - strand, within GFF5051 at 152.611 kb on - strand, within GFF5051 at 152.665 kb on - strand at 152.753 kb on - strand at 152.897 kb on + strand at 152.897 kb on + strand at 152.897 kb on + strand at 152.897 kb on + strand at 152.897 kb on + strand at 152.897 kb on + strand at 152.897 kb on + strand at 152.897 kb on + strand at 152.897 kb on + strand at 152.897 kb on + strand at 152.897 kb on + strand at 152.897 kb on + strand at 152.898 kb on - strand at 152.898 kb on - strand at 152.898 kb on - strand at 152.898 kb on - strand at 152.898 kb on - strand at 152.898 kb on - strand at 152.898 kb on - strand at 152.898 kb on - strand at 152.898 kb on - strand at 152.898 kb on - strand at 152.909 kb on + strand at 152.909 kb on + strand at 152.909 kb on + strand at 152.910 kb on - strand at 152.910 kb on - strand at 152.930 kb on + strand at 152.930 kb on + strand at 152.930 kb on + strand at 152.930 kb on + strand at 152.931 kb on - strand at 152.931 kb on - strand at 152.931 kb on - strand at 152.931 kb on - strand at 152.931 kb on - strand at 153.212 kb on + strand, within GFF5052 at 153.212 kb on + strand, within GFF5052 at 153.213 kb on - strand, within GFF5052 at 153.213 kb on - strand, within GFF5052 at 153.275 kb on + strand, within GFF5052 at 153.275 kb on + strand, within GFF5052 at 153.275 kb on + strand, within GFF5052 at 153.275 kb on + strand, within GFF5052 at 153.275 kb on + strand, within GFF5052 at 153.275 kb on + strand, within GFF5052 at 153.275 kb on + strand, within GFF5052 at 153.275 kb on + strand, within GFF5052 at 153.275 kb on + strand, within GFF5052 at 153.275 kb on + strand, within GFF5052 at 153.276 kb on - strand, within GFF5052 at 153.276 kb on - strand, within GFF5052 at 153.276 kb on - strand, within GFF5052 at 153.276 kb on - strand, within GFF5052 at 153.276 kb on - strand, within GFF5052 at 153.276 kb on - strand, within GFF5052 at 153.276 kb on - strand, within GFF5052 at 153.276 kb on - strand, within GFF5052 at 153.276 kb on - strand, within GFF5052 at 153.276 kb on - strand, within GFF5052 at 153.278 kb on + strand, within GFF5052 at 153.278 kb on + strand, within GFF5052 at 153.278 kb on + strand, within GFF5052 at 153.278 kb on + strand, within GFF5052 at 153.278 kb on + strand, within GFF5052 at 153.278 kb on + strand, within GFF5052 at 153.278 kb on + strand, within GFF5052 at 153.278 kb on + strand, within GFF5052 at 153.278 kb on + strand, within GFF5052 at 153.278 kb on + strand, within GFF5052 at 153.278 kb on + strand, within GFF5052 at 153.279 kb on - strand, within GFF5052 at 153.279 kb on - strand, within GFF5052 at 153.279 kb on - strand, within GFF5052 at 153.279 kb on - strand, within GFF5052 at 153.279 kb on - strand, within GFF5052 at 153.279 kb on - strand, within GFF5052 at 153.279 kb on - strand, within GFF5052 at 153.279 kb on - strand, within GFF5052 at 153.279 kb on - strand, within GFF5052 at 153.279 kb on - strand, within GFF5052 at 153.290 kb on + strand, within GFF5052 at 153.291 kb on - strand, within GFF5052 at 153.291 kb on - strand, within GFF5052 at 153.291 kb on - strand, within GFF5052 at 153.291 kb on - strand, within GFF5052 at 153.291 kb on - strand, within GFF5052 at 153.291 kb on - strand, within GFF5052 at 153.428 kb on + strand, within GFF5052 at 153.770 kb on + strand, within GFF5052 at 153.770 kb on + strand, within GFF5052 at 153.770 kb on + strand, within GFF5052 at 153.770 kb on + strand, within GFF5052 at 153.770 kb on + strand, within GFF5052 at 153.771 kb on - strand, within GFF5052 at 153.771 kb on - strand, within GFF5052 at 153.771 kb on - strand, within GFF5052 at 153.912 kb on + strand, within GFF5052 at 153.912 kb on + strand, within GFF5052 at 153.913 kb on - strand, within GFF5052 at 153.959 kb on + strand, within GFF5052 at 153.959 kb on + strand, within GFF5052 at 153.959 kb on + strand, within GFF5052 at 153.959 kb on + strand, within GFF5052 at 153.959 kb on + strand, within GFF5052 at 153.959 kb on + strand, within GFF5052 at 153.959 kb on + strand, within GFF5052 at 153.959 kb on + strand, within GFF5052 at 153.959 kb on + strand, within GFF5052 at 153.959 kb on + strand, within GFF5052 at 153.959 kb on + strand, within GFF5052 at 153.959 kb on + strand, within GFF5052 at 153.959 kb on + strand, within GFF5052 at 153.959 kb on + strand, within GFF5052 at 153.959 kb on + strand, within GFF5052 at 153.959 kb on + strand, within GFF5052 at 153.959 kb on + strand, within GFF5052 at 153.960 kb on - strand, within GFF5052 at 153.960 kb on - strand, within GFF5052 at 153.960 kb on - strand, within GFF5052 at 153.960 kb on - strand, within GFF5052 at 153.960 kb on - strand, within GFF5052 at 153.960 kb on - strand, within GFF5052 at 153.960 kb on - strand, within GFF5052 at 153.960 kb on - strand, within GFF5052 at 153.960 kb on - strand, within GFF5052 at 153.960 kb on - strand, within GFF5052 at 153.960 kb on - strand, within GFF5052 at 153.960 kb on - strand, within GFF5052 at 153.960 kb on - strand, within GFF5052 at 153.960 kb on - strand, within GFF5052 at 153.960 kb on - strand, within GFF5052 at 153.960 kb on - strand, within GFF5052 at 153.960 kb on - strand, within GFF5052 at 153.960 kb on - strand, within GFF5052 at 154.419 kb on - strand at 154.442 kb on + strand at 154.442 kb on + strand at 154.442 kb on + strand at 154.443 kb on - strand at 154.443 kb on - strand at 154.606 kb on + strand, within GFF5053 at 154.606 kb on + strand, within GFF5053 at 154.607 kb on - strand, within GFF5053 at 154.802 kb on - strand at 154.842 kb on + strand at 154.843 kb on - strand at 154.843 kb on - strand at 154.866 kb on + strand at 154.866 kb on + strand at 154.866 kb on + strand at 154.866 kb on + strand at 154.866 kb on + strand at 154.867 kb on - strand at 154.867 kb on - strand at 154.867 kb on - strand at 154.938 kb on + strand at 154.938 kb on + strand at 154.938 kb on + strand at 154.939 kb on - strand at 154.939 kb on - strand at 154.939 kb on - strand at 154.939 kb on - strand at 154.939 kb on - strand at 155.004 kb on + strand, within GFF5054 at 155.037 kb on + strand, within GFF5054 at 155.038 kb on - strand, within GFF5054 at 155.046 kb on + strand, within GFF5054 at 155.046 kb on + strand, within GFF5054 at 155.046 kb on + strand, within GFF5054 at 155.046 kb on + strand, within GFF5054 at 155.047 kb on - strand, within GFF5054 at 155.047 kb on - strand, within GFF5054 at 155.047 kb on - strand, within GFF5054 at 155.047 kb on - strand, within GFF5054 at 155.047 kb on - strand, within GFF5054 at 155.223 kb on + strand, within GFF5054 at 155.223 kb on + strand, within GFF5054 at 155.223 kb on + strand, within GFF5054 at 155.223 kb on + strand, within GFF5054 at 155.223 kb on + strand, within GFF5054 at 155.223 kb on + strand, within GFF5054 at 155.224 kb on - strand, within GFF5054 at 155.224 kb on - strand, within GFF5054 at 155.224 kb on - strand, within GFF5054 at 155.224 kb on - strand, within GFF5054 at 155.224 kb on - strand, within GFF5054 at 155.224 kb on - strand, within GFF5054 at 155.224 kb on - strand, within GFF5054 at 155.415 kb on + strand, within GFF5054 at 155.415 kb on + strand, within GFF5054 at 155.416 kb on - strand, within GFF5054 at 155.430 kb on + strand, within GFF5054 at 155.431 kb on - strand, within GFF5054 at 155.431 kb on - strand, within GFF5054 at 155.431 kb on - strand, within GFF5054 at 155.431 kb on - strand, within GFF5054
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 152,013 + GFF5051 0.23 -1.7 152,013 + GFF5051 0.23 -1.4 152,013 + GFF5051 0.23 -1.1 152,013 + GFF5051 0.23 +1.5 152,013 + GFF5051 0.23 -0.3 152,013 + GFF5051 0.23 +0.1 152,013 + GFF5051 0.23 +0.3 152,013 + GFF5051 0.23 +0.5 152,013 + GFF5051 0.23 -0.1 152,013 + GFF5051 0.23 -1.3 152,014 - GFF5051 0.24 -0.1 152,014 - GFF5051 0.24 +0.7 152,014 - GFF5051 0.24 -0.5 152,014 - GFF5051 0.24 -0.9 152,014 - GFF5051 0.24 +0.5 152,014 - GFF5051 0.24 -1.8 152,014 - GFF5051 0.24 +1.1 152,014 - GFF5051 0.24 -0.7 152,031 + GFF5051 0.25 -0.6 152,031 + GFF5051 0.25 -0.4 152,031 + GFF5051 0.25 -1.8 152,032 - GFF5051 0.25 -1.5 152,032 - GFF5051 0.25 +0.2 152,032 - GFF5051 0.25 +0.1 152,368 - GFF5051 0.60 +2.3 152,382 + GFF5051 0.62 -0.8 152,382 + GFF5051 0.62 -0.2 152,383 - GFF5051 0.62 +0.6 152,383 - GFF5051 0.62 -0.0 152,526 + GFF5051 0.77 +0.9 152,526 + GFF5051 0.77 -0.4 152,526 + GFF5051 0.77 +0.5 152,526 + GFF5051 0.77 -2.4 152,526 + GFF5051 0.77 -0.8 152,526 + GFF5051 0.77 -3.9 152,526 + GFF5051 0.77 -1.7 152,526 + GFF5051 0.77 -2.1 152,526 + GFF5051 0.77 +0.9 152,526 + GFF5051 0.77 +0.4 152,527 - GFF5051 0.77 -1.2 152,527 - GFF5051 0.77 -0.4 152,527 - GFF5051 0.77 -1.5 152,527 - GFF5051 0.77 +1.1 152,527 - GFF5051 0.77 +0.1 152,527 - GFF5051 0.77 -1.9 152,577 + GFF5051 0.82 -1.4 152,578 - GFF5051 0.82 +1.2 152,578 - GFF5051 0.82 -0.9 152,589 + GFF5051 0.83 -0.9 152,589 + GFF5051 0.83 -2.8 152,589 + GFF5051 0.83 -0.9 152,589 + GFF5051 0.83 -1.2 152,589 + GFF5051 0.83 -1.7 152,589 + GFF5051 0.83 -0.7 152,590 - GFF5051 0.84 -1.6 152,590 - GFF5051 0.84 -0.1 152,590 - GFF5051 0.84 -2.2 152,610 + GFF5051 0.86 -2.9 152,610 + GFF5051 0.86 +0.9 152,610 + GFF5051 0.86 -0.7 152,611 - GFF5051 0.86 +2.5 152,611 - GFF5051 0.86 +1.6 152,611 - GFF5051 0.86 +1.0 152,611 - GFF5051 0.86 +0.5 152,611 - GFF5051 0.86 +0.8 152,665 - +0.0 152,753 - -0.1 152,897 + -0.6 152,897 + -2.7 152,897 + -2.4 152,897 + -1.9 152,897 + -0.5 152,897 + +0.5 152,897 + +1.0 152,897 + +0.8 152,897 + -1.9 152,897 + -0.6 152,897 + -0.1 152,897 + -0.3 152,898 - -1.7 152,898 - -2.2 152,898 - +0.2 152,898 - -0.7 152,898 - -1.2 152,898 - -0.3 152,898 - -0.1 152,898 - -0.2 152,898 - -1.2 152,898 - -1.7 152,909 + +0.5 152,909 + -1.4 152,909 + -0.9 152,910 - +0.5 152,910 - -0.3 152,930 + -1.8 152,930 + +0.1 152,930 + -0.3 152,930 + +1.6 152,931 - +1.5 152,931 - +1.7 152,931 - -0.3 152,931 - -0.5 152,931 - -1.1 153,212 + GFF5052 0.19 -3.1 153,212 + GFF5052 0.19 +1.1 153,213 - GFF5052 0.19 -0.5 153,213 - GFF5052 0.19 -0.9 153,275 + GFF5052 0.23 +1.5 153,275 + GFF5052 0.23 -1.3 153,275 + GFF5052 0.23 -1.9 153,275 + GFF5052 0.23 -1.4 153,275 + GFF5052 0.23 -1.3 153,275 + GFF5052 0.23 +2.0 153,275 + GFF5052 0.23 -1.5 153,275 + GFF5052 0.23 +0.4 153,275 + GFF5052 0.23 +1.4 153,275 + GFF5052 0.23 -1.2 153,276 - GFF5052 0.23 -1.7 153,276 - GFF5052 0.23 +0.2 153,276 - GFF5052 0.23 -0.3 153,276 - GFF5052 0.23 -0.2 153,276 - GFF5052 0.23 +0.9 153,276 - GFF5052 0.23 +1.7 153,276 - GFF5052 0.23 +1.5 153,276 - GFF5052 0.23 -0.1 153,276 - GFF5052 0.23 +1.2 153,276 - GFF5052 0.23 -1.1 153,278 + GFF5052 0.23 +2.8 153,278 + GFF5052 0.23 +0.9 153,278 + GFF5052 0.23 -0.1 153,278 + GFF5052 0.23 -1.9 153,278 + GFF5052 0.23 -0.3 153,278 + GFF5052 0.23 +0.6 153,278 + GFF5052 0.23 +0.3 153,278 + GFF5052 0.23 +1.6 153,278 + GFF5052 0.23 -0.6 153,278 + GFF5052 0.23 +0.0 153,278 + GFF5052 0.23 -2.0 153,279 - GFF5052 0.23 -2.4 153,279 - GFF5052 0.23 -1.5 153,279 - GFF5052 0.23 +1.3 153,279 - GFF5052 0.23 -0.5 153,279 - GFF5052 0.23 +1.2 153,279 - GFF5052 0.23 -0.9 153,279 - GFF5052 0.23 +0.5 153,279 - GFF5052 0.23 -1.3 153,279 - GFF5052 0.23 -1.2 153,279 - GFF5052 0.23 -0.2 153,290 + GFF5052 0.24 +0.8 153,291 - GFF5052 0.24 -0.4 153,291 - GFF5052 0.24 -1.5 153,291 - GFF5052 0.24 +0.4 153,291 - GFF5052 0.24 -2.0 153,291 - GFF5052 0.24 -0.1 153,291 - GFF5052 0.24 -0.2 153,428 + GFF5052 0.32 +0.6 153,770 + GFF5052 0.53 +3.1 153,770 + GFF5052 0.53 -1.7 153,770 + GFF5052 0.53 -1.4 153,770 + GFF5052 0.53 -0.5 153,770 + GFF5052 0.53 -0.9 153,771 - GFF5052 0.53 +0.6 153,771 - GFF5052 0.53 +1.1 153,771 - GFF5052 0.53 -0.8 153,912 + GFF5052 0.62 -2.0 153,912 + GFF5052 0.62 -1.5 153,913 - GFF5052 0.62 -1.6 153,959 + GFF5052 0.65 +1.5 153,959 + GFF5052 0.65 +1.9 153,959 + GFF5052 0.65 +0.4 153,959 + GFF5052 0.65 -0.1 153,959 + GFF5052 0.65 +0.9 153,959 + GFF5052 0.65 -1.1 153,959 + GFF5052 0.65 -0.7 153,959 + GFF5052 0.65 -1.9 153,959 + GFF5052 0.65 +1.7 153,959 + GFF5052 0.65 -1.4 153,959 + GFF5052 0.65 -0.9 153,959 + GFF5052 0.65 +2.4 153,959 + GFF5052 0.65 -0.7 153,959 + GFF5052 0.65 -0.9 153,959 + GFF5052 0.65 -1.5 153,959 + GFF5052 0.65 -0.0 153,959 + GFF5052 0.65 -0.6 153,960 - GFF5052 0.65 -0.6 153,960 - GFF5052 0.65 -1.5 153,960 - GFF5052 0.65 -0.5 153,960 - GFF5052 0.65 -0.5 153,960 - GFF5052 0.65 -0.8 153,960 - GFF5052 0.65 +1.2 153,960 - GFF5052 0.65 -0.3 153,960 - GFF5052 0.65 -0.2 153,960 - GFF5052 0.65 +0.6 153,960 - GFF5052 0.65 +1.8 153,960 - GFF5052 0.65 +2.0 153,960 - GFF5052 0.65 +2.7 153,960 - GFF5052 0.65 +1.5 153,960 - GFF5052 0.65 +0.7 153,960 - GFF5052 0.65 +3.2 153,960 - GFF5052 0.65 +1.1 153,960 - GFF5052 0.65 -1.3 153,960 - GFF5052 0.65 -1.1 154,419 - +0.7 154,442 + -2.3 154,442 + +0.6 154,442 + -1.1 154,443 - +0.5 154,443 - -0.1 154,606 + GFF5053 0.32 -0.6 154,606 + GFF5053 0.32 +0.6 154,607 - GFF5053 0.33 -0.4 154,802 - -0.3 154,842 + -0.8 154,843 - -0.7 154,843 - -2.1 154,866 + -0.3 154,866 + -2.7 154,866 + +2.5 154,866 + +0.1 154,866 + +0.4 154,867 - +2.1 154,867 - -1.8 154,867 - +0.5 154,938 + +0.1 154,938 + +0.0 154,938 + -0.5 154,939 - -0.5 154,939 - +2.5 154,939 - -2.1 154,939 - -0.2 154,939 - -1.9 155,004 + GFF5054 0.15 -0.4 155,037 + GFF5054 0.17 -2.6 155,038 - GFF5054 0.17 +1.7 155,046 + GFF5054 0.18 +1.2 155,046 + GFF5054 0.18 -1.3 155,046 + GFF5054 0.18 +2.1 155,046 + GFF5054 0.18 +0.6 155,047 - GFF5054 0.18 -0.2 155,047 - GFF5054 0.18 -1.7 155,047 - GFF5054 0.18 -1.9 155,047 - GFF5054 0.18 -0.5 155,047 - GFF5054 0.18 -0.4 155,223 + GFF5054 0.32 +2.1 155,223 + GFF5054 0.32 +1.1 155,223 + GFF5054 0.32 -2.1 155,223 + GFF5054 0.32 -0.3 155,223 + GFF5054 0.32 -0.7 155,223 + GFF5054 0.32 -4.5 155,224 - GFF5054 0.32 +1.7 155,224 - GFF5054 0.32 -1.6 155,224 - GFF5054 0.32 +0.6 155,224 - GFF5054 0.32 -0.2 155,224 - GFF5054 0.32 +0.1 155,224 - GFF5054 0.32 +0.1 155,224 - GFF5054 0.32 -0.5 155,415 + GFF5054 0.46 +0.2 155,415 + GFF5054 0.46 -2.0 155,416 - GFF5054 0.46 -1.6 155,430 + GFF5054 0.47 -1.7 155,431 - GFF5054 0.47 +0.6 155,431 - GFF5054 0.47 -2.1 155,431 - GFF5054 0.47 +0.9 155,431 - GFF5054 0.47 +2.9
Or see this region's nucleotide sequence