Strain Fitness in Variovorax sp. SCN45 around GFF5

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
3,537	+				-0.2
3,537	+				-0.5
3,537	+				+1.8
3,537	+				+0.2
3,537	+				+0.4
3,537	+				+0.3
3,537	+				-1.0
3,537	+				-3.8
3,537	+				+0.5
3,537	+				+1.6
3,538	-				-0.7
3,538	-				+1.2
3,538	-				-0.2
3,538	-				+2.9
3,538	-				+0.9
3,538	-				+0.5
3,538	-				+2.1
3,538	-				-2.2
3,538	-				-0.5
3,538	-				-1.8
3,538	-				+1.8
3,538	-				-0.6
3,541	+				+1.1
3,541	+				+1.1
3,541	+				-0.8
3,541	+				-0.2
3,542	-				-1.2
3,542	-				+1.8
3,542	-				-0.1
3,542	-				+2.0
3,571	+				-0.3
3,572	-				+1.1
3,871	+				-1.5
3,871	+				+1.8
3,871	+				+0.6
3,871	+				-0.9
3,871	+				-1.2
3,872	-				-0.8
3,872	-				-0.2
3,872	-				+1.1
3,872	-				-0.7
3,872	-				+0.2
3,872	-				+1.2
4,081	+		GFF4	0.51	-1.9
4,081	+		GFF4	0.51	-1.7
4,081	+		GFF4	0.51	-1.0
4,081	+		GFF4	0.51	-1.0
4,081	+		GFF4	0.51	+0.2
4,081	+		GFF4	0.51	-1.0
4,082	-		GFF4	0.52	-0.5
4,082	-		GFF4	0.52	-1.5
4,082	-		GFF4	0.52	-0.5
4,082	-		GFF4	0.52	-0.5
4,082	-		GFF4	0.52	+4.9
4,156	+		GFF4	0.70	-3.0
4,156	+		GFF4	0.70	+1.2
4,157	-		GFF4	0.70	+0.5
4,157	-		GFF4	0.70	-1.9
4,157	-		GFF4	0.70	-1.2
4,157	-		GFF4	0.70	+0.8
4,157	-		GFF4	0.70	-1.0
4,250	+				-0.1
4,250	+				-1.2
4,250	+				+1.1
4,250	+				-0.2
4,250	+				-0.2
4,250	+				+0.2
4,250	+				+1.2
4,250	+				-1.4
4,250	+				-0.9
4,250	+				-0.8
4,251	-				+0.9
4,251	-				-3.2
4,251	-				-0.3
4,251	-				-2.1
4,251	-				-0.6
4,251	-				-0.1
4,296	+				-0.2
4,296	+				-0.8
4,296	+				-2.4
4,296	+				-0.2
4,297	-				-2.0
4,297	-				-0.2
4,297	-				+1.8
4,297	-				-1.5
4,548	+		GFF5	0.25	-0.2
4,548	+		GFF5	0.25	+1.1
4,549	-		GFF5	0.25	-1.9
4,549	-		GFF5	0.25	+2.2
4,641	+		GFF5	0.34	-1.9
4,755	+		GFF5	0.44	-1.0
4,755	+		GFF5	0.44	-1.1
4,755	+		GFF5	0.44	-0.5
4,756	-		GFF5	0.45	-0.5
4,756	-		GFF5	0.45	+2.9
4,756	-		GFF5	0.45	+2.6
4,986	+		GFF5	0.66	-2.1
5,010	+		GFF5	0.68	-2.0
5,010	+		GFF5	0.68	+0.7
5,011	-		GFF5	0.68	-2.2
5,011	-		GFF5	0.68	+0.2
5,028	+		GFF5	0.70	-1.9
5,058	+		GFF5	0.73	+1.8
5,511	+		GFF6	0.49	-0.6
5,512	-		GFF6	0.50	-0.7
5,512	-		GFF6	0.50	-2.4
5,640	+		GFF6	0.82	+0.4
5,656	+		GFF6	0.86	+0.2
5,657	-		GFF6	0.86	-2.5
5,657	-		GFF6	0.86	-2.5
5,657	-		GFF6	0.86	+0.5
5,657	-		GFF6	0.86	-0.1
5,657	-		GFF6	0.86	-0.8
5,756	+		GFF7	0.13	+0.8
5,849	+		GFF7	0.38	+0.6
5,850	-		GFF7	0.38	-0.5
5,870	+		GFF7	0.43	-0.8
5,870	+		GFF7	0.43	-0.5
5,871	-		GFF7	0.44	+0.5
5,871	-		GFF7	0.44	-0.5
5,871	-		GFF7	0.44	+0.8
6,002	+		GFF7	0.79	-0.5
6,002	+		GFF7	0.79	-0.0
6,002	+		GFF7	0.79	-1.5
6,003	-		GFF7	0.79	-0.8
6,003	-		GFF7	0.79	+0.3
6,003	-		GFF7	0.79	+0.5
6,003	-		GFF7	0.79	-1.5
6,003	-		GFF7	0.79	-1.5
6,308	+		GFF8	0.15	+1.4
6,308	+		GFF8	0.15	+0.2
6,309	-		GFF8	0.15	+0.6