Strain Fitness in Variovorax sp. SCN45 around GFF4984

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
83,557	-		GFF4983	0.28	+0.3
83,557	-		GFF4983	0.28	+0.9
83,557	-		GFF4983	0.28	-0.2
83,557	-		GFF4983	0.28	-1.4
83,557	-		GFF4983	0.28	-0.0
83,557	-		GFF4983	0.28	+0.1
83,661	+		GFF4983	0.35	-1.7
83,661	+		GFF4983	0.35	-2.2
83,661	+		GFF4983	0.35	+0.1
83,661	+		GFF4983	0.35	-1.6
83,661	+		GFF4983	0.35	-0.6
83,661	+		GFF4983	0.35	+0.4
83,662	-		GFF4983	0.35	+0.5
83,662	-		GFF4983	0.35	+1.5
83,826	+		GFF4983	0.48	+0.1
83,827	-		GFF4983	0.48	-0.7
83,827	-		GFF4983	0.48	-2.0
83,827	-		GFF4983	0.48	-1.6
83,827	-		GFF4983	0.48	-0.5
83,827	-		GFF4983	0.48	+0.9
84,120	+		GFF4983	0.69	+1.1
84,120	+		GFF4983	0.69	-1.1
84,120	+		GFF4983	0.69	-1.5
84,120	+		GFF4983	0.69	+0.1
84,120	+		GFF4983	0.69	-0.2
84,120	+		GFF4983	0.69	+2.7
84,120	+		GFF4983	0.69	+0.9
84,120	+		GFF4983	0.69	+2.0
84,120	+		GFF4983	0.69	-0.9
84,120	+		GFF4983	0.69	-1.3
84,121	-		GFF4983	0.69	+0.1
84,121	-		GFF4983	0.69	+0.8
84,121	-		GFF4983	0.69	+0.7
84,121	-		GFF4983	0.69	-1.3
84,121	-		GFF4983	0.69	+1.7
84,121	-		GFF4983	0.69	+1.1
84,121	-		GFF4983	0.69	-2.1
84,121	-		GFF4983	0.69	-1.4
84,121	-		GFF4983	0.69	+0.4
84,121	-		GFF4983	0.69	+1.5
84,121	-		GFF4983	0.69	-1.1
84,121	-		GFF4983	0.69	-0.1
84,121	-		GFF4983	0.69	+1.7
84,121	-		GFF4983	0.69	+2.5
84,121	-		GFF4983	0.69	+0.1
84,121	-		GFF4983	0.69	+1.5
84,121	-		GFF4983	0.69	-0.5
84,180	+		GFF4983	0.74	+0.6
84,180	+		GFF4983	0.74	-0.3
84,180	+		GFF4983	0.74	-2.3
84,180	+		GFF4983	0.74	+0.5
84,181	-		GFF4983	0.74	-0.1
84,181	-		GFF4983	0.74	-0.7
84,195	+		GFF4983	0.75	-1.9
84,195	+		GFF4983	0.75	+0.1
84,195	+		GFF4983	0.75	+0.8
84,196	-		GFF4983	0.75	+0.2
84,327	+		GFF4983	0.85	-2.4
84,327	+		GFF4983	0.85	-0.0
84,328	-		GFF4983	0.85	+0.5
84,328	-		GFF4983	0.85	+0.6
84,328	-		GFF4983	0.85	-0.5
84,384	+		GFF4983	0.89	+0.5
84,403	+				-0.9
84,403	+				+0.8
84,403	+				-0.2
84,404	-				+0.0
84,404	-				-1.9
84,404	-				-2.5
84,404	-				-1.1
84,404	-				-0.7
84,477	+				-2.7
84,477	+				+0.5
84,477	+				-0.1
84,477	+				-0.7
84,477	+				+0.9
84,477	+				+1.3
84,477	+				-1.6
84,477	+				-0.3
84,477	+				-0.7
84,477	+				-0.1
84,478	-				+0.4
84,478	-				+0.8
84,478	-				-0.3
84,478	-				-0.1
84,478	-				+2.3
84,478	-				-0.1
84,478	-				-1.2
84,478	-				+1.8
84,478	-				-0.3
84,478	-				-1.8
84,478	-				-0.0
84,478	-				+1.1
84,478	-				-0.5
84,478	-				-0.9
84,478	-				-2.1
84,478	-				-0.1
84,478	-				-1.2
84,478	-				-1.9
84,478	-				+1.7
84,478	-				-0.8
84,478	-				+1.6
84,478	-				-0.9
84,478	-				-1.1
84,533	+				+1.5
84,533	+				-0.2
84,533	+				-1.0
84,534	-				-0.9
84,534	-				+1.1
84,534	-				-0.6
84,534	-				+0.8
84,534	-				+0.1
84,534	-				-2.3
84,534	-				-1.1
84,534	-				+2.2
84,950	+		GFF4984	0.43	+1.0
84,951	-		GFF4984	0.43	-0.3
84,951	-		GFF4984	0.43	-0.9
84,951	-		GFF4984	0.43	+1.5
85,040	+		GFF4984	0.52	+0.5
85,040	+		GFF4984	0.52	-3.1
85,040	+		GFF4984	0.52	-1.8
85,040	+		GFF4984	0.52	-0.2
85,040	+		GFF4984	0.52	-1.9
85,040	+		GFF4984	0.52	+0.7
85,040	+		GFF4984	0.52	+1.1
85,041	-		GFF4984	0.52	-2.7
85,041	-		GFF4984	0.52	-0.1
85,041	-		GFF4984	0.52	-0.1
85,041	-		GFF4984	0.52	+1.1
85,041	-		GFF4984	0.52	-0.2
85,041	-		GFF4984	0.52	+0.2
85,041	-		GFF4984	0.52	+1.1
85,041	-		GFF4984	0.52	+1.3
85,041	-		GFF4984	0.52	+0.9
85,148	+		GFF4984	0.63	+0.4
85,148	+		GFF4984	0.63	-0.2
85,148	+		GFF4984	0.63	-0.1
85,148	+		GFF4984	0.63	+1.9
85,148	+		GFF4984	0.63	+1.4
85,148	+		GFF4984	0.63	-0.1
85,149	-		GFF4984	0.63	-2.2
85,149	-		GFF4984	0.63	+0.5
85,149	-		GFF4984	0.63	+0.5
85,149	-		GFF4984	0.63	-0.1
85,149	-		GFF4984	0.63	+0.1
85,149	-		GFF4984	0.63	+0.2
85,149	-		GFF4984	0.63	+0.2
85,149	-		GFF4984	0.63	+1.3
85,149	-		GFF4984	0.63	-1.2
85,149	-		GFF4984	0.63	+0.5
85,149	-		GFF4984	0.63	-0.3
85,149	-		GFF4984	0.63	-0.7
85,149	-		GFF4984	0.63	+3.1
85,149	-		GFF4984	0.63	-0.7
85,149	-		GFF4984	0.63	-1.9
85,172	+		GFF4984	0.65	-3.3
85,187	+		GFF4984	0.67	+0.3
85,187	+		GFF4984	0.67	+1.0
85,187	+		GFF4984	0.67	-2.3
85,187	+		GFF4984	0.67	-2.0
85,187	+		GFF4984	0.67	+2.2
85,188	-		GFF4984	0.67	+0.9
85,188	-		GFF4984	0.67	+0.2
85,188	-		GFF4984	0.67	+1.7
85,188	-		GFF4984	0.67	-1.3
85,555	+				+0.7
85,555	+				-1.1
85,555	+				+0.9
85,555	+				-2.2
85,556	-				-1.9
85,556	-				-0.2
85,556	-				-1.5
85,556	-				-0.3
85,556	-				-0.2
85,556	-				+0.1
85,594	+				-0.1
85,595	-				+0.5
85,595	-				-0.7
85,633	+				-1.9
85,633	+				+0.3
85,633	+				-2.2
85,634	-				+0.3
85,634	-				-0.6
85,909	+		GFF4985	0.32	+0.1
85,909	+		GFF4985	0.32	+1.1
85,909	+		GFF4985	0.32	+0.8
85,909	+		GFF4985	0.32	+2.3
85,910	-		GFF4985	0.32	-0.3
85,910	-		GFF4985	0.32	+0.7
85,930	+		GFF4985	0.34	-0.8
85,930	+		GFF4985	0.34	+0.4
85,930	+		GFF4985	0.34	-0.9
85,930	+		GFF4985	0.34	-2.9
85,930	+		GFF4985	0.34	-1.2
85,930	+		GFF4985	0.34	-2.3
85,930	+		GFF4985	0.34	-2.1
85,930	+		GFF4985	0.34	-0.5
85,931	-		GFF4985	0.34	-0.4
85,931	-		GFF4985	0.34	+0.5
85,931	-		GFF4985	0.34	-1.0
85,931	-		GFF4985	0.34	-0.5
85,931	-		GFF4985	0.34	+0.5
85,931	-		GFF4985	0.34	-0.9
85,931	-		GFF4985	0.34	-3.4
85,931	-		GFF4985	0.34	+2.5
85,931	-		GFF4985	0.34	+0.1
85,931	-		GFF4985	0.34	+0.1
85,931	-		GFF4985	0.34	-0.4
85,996	+		GFF4985	0.41	-0.5
85,996	+		GFF4985	0.41	-1.1
85,996	+		GFF4985	0.41	-1.4
85,997	-		GFF4985	0.41	+1.9
85,997	-		GFF4985	0.41	-3.4
86,104	+		GFF4985	0.52	-0.5
86,105	-		GFF4985	0.52	+0.1
86,105	-		GFF4985	0.52	-1.6
86,257	+		GFF4985	0.67	-0.1
86,257	+		GFF4985	0.67	-1.8
86,257	+		GFF4985	0.67	-0.2
86,257	+		GFF4985	0.67	-1.3
86,257	+		GFF4985	0.67	+1.5
86,257	+		GFF4985	0.67	-0.4
86,257	+		GFF4985	0.67	-2.0
86,257	+		GFF4985	0.67	-2.4
86,258	-		GFF4985	0.67	+0.5
86,258	-		GFF4985	0.67	-1.7
86,258	-		GFF4985	0.67	+1.2
86,258	-		GFF4985	0.67	-0.2
86,258	-		GFF4985	0.67	-0.7
86,258	-		GFF4985	0.67	-2.1
86,258	-		GFF4985	0.67	-0.1
86,258	-		GFF4985	0.67	-1.5
86,309	-		GFF4985	0.73	+1.8
86,309	-		GFF4985	0.73	-0.3
86,309	-		GFF4985	0.73	+1.9