Strain Fitness in Variovorax sp. SCN45 around GFF4730

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
91,664	+		GFF4728	0.48	+0.7
91,758	+		GFF4728	0.56	-0.7
91,850	+		GFF4728	0.65	+1.3
91,850	+		GFF4728	0.65	+1.3
91,851	-		GFF4728	0.65	-2.1
91,851	-		GFF4728	0.65	-0.8
92,010	+		GFF4728	0.79	-0.1
92,011	-		GFF4728	0.79	-1.6
92,034	+		GFF4728	0.82	-0.4
92,034	+		GFF4728	0.82	+1.1
92,035	-		GFF4728	0.82	-2.1
92,035	-		GFF4728	0.82	+1.1
92,037	+		GFF4728	0.82	+0.2
92,037	+		GFF4728	0.82	-0.2
92,038	-		GFF4728	0.82	+3.3
92,122	-		GFF4728	0.90	+1.9
92,122	-		GFF4728	0.90	+1.3
92,148	+				+0.4
92,148	+				-1.0
92,148	+				+1.0
92,148	+				-2.2
92,148	+				-0.4
92,148	+				-0.3
92,148	+				+0.7
92,148	+				-0.1
92,148	+				-2.4
92,148	+				+0.8
92,149	-				-0.7
92,149	-				+0.9
92,149	-				-0.7
92,149	-				-0.3
92,149	-				+1.5
92,149	-				+2.7
92,149	-				-1.1
92,149	-				-0.1
92,149	-				+2.6
92,149	-				+1.2
92,149	-				-0.6
92,149	-				-0.5
92,149	-				-1.3
92,293	+				-0.4
92,294	-				-0.4
92,346	+		GFF4729	0.38	-0.4
92,347	-		GFF4729	0.38	-0.9
92,347	-		GFF4729	0.38	-2.5
92,347	-		GFF4729	0.38	+1.7
92,373	-		GFF4729	0.56	-0.0
92,383	+		GFF4729	0.63	-0.4
92,383	+		GFF4729	0.63	-1.1
92,402	+		GFF4729	0.76	+1.5
92,402	+		GFF4729	0.76	+0.5
92,402	+		GFF4729	0.76	-0.9
92,402	+		GFF4729	0.76	-2.4
92,403	-		GFF4729	0.77	+1.1
92,403	-		GFF4729	0.77	+0.3
92,403	-		GFF4729	0.77	-0.3
92,403	-		GFF4729	0.77	+0.2
93,006	+		GFF4730	0.25	-1.8
93,007	-		GFF4730	0.25	+1.7
93,007	-		GFF4730	0.25	-1.3
93,255	+		GFF4730	0.36	+0.5
93,255	+		GFF4730	0.36	-0.8
93,256	-		GFF4730	0.36	-1.5
93,256	-		GFF4730	0.36	+0.9
93,256	-		GFF4730	0.36	+0.5
93,339	+		GFF4730	0.40	+0.2
93,345	+		GFF4730	0.40	-1.9
93,346	-		GFF4730	0.40	-2.5
93,346	-		GFF4730	0.40	-0.2
93,346	-		GFF4730	0.40	-1.4
93,516	+		GFF4730	0.47	+0.2
93,517	-		GFF4730	0.47	-0.1
93,612	+		GFF4730	0.52	-0.4
93,612	+		GFF4730	0.52	-0.6
93,612	+		GFF4730	0.52	-0.9
93,612	+		GFF4730	0.52	+0.3
93,787	-		GFF4730	0.59	-0.6
93,787	-		GFF4730	0.59	+2.6
93,787	-		GFF4730	0.59	+0.5
93,828	+		GFF4730	0.61	-1.1
93,828	+		GFF4730	0.61	+0.5
93,828	+		GFF4730	0.61	+0.0
93,829	-		GFF4730	0.61	+1.8
93,829	-		GFF4730	0.61	-2.3
93,909	+		GFF4730	0.65	+0.1
93,909	+		GFF4730	0.65	+1.9
94,051	-		GFF4730	0.71	+3.3
94,120	-		GFF4730	0.74	-1.7
94,152	+		GFF4730	0.75	-2.2
94,152	+		GFF4730	0.75	-2.5
94,152	+		GFF4730	0.75	-0.3
94,152	+		GFF4730	0.75	-1.3
94,153	-		GFF4730	0.75	-1.4
94,153	-		GFF4730	0.75	-0.3
94,153	-		GFF4730	0.75	+1.6
94,443	+		GFF4730	0.88	-1.7
94,444	-		GFF4730	0.88	+0.5
94,444	-		GFF4730	0.88	-0.5
94,444	-		GFF4730	0.88	-0.1
94,491	+				-1.1
94,491	+				-2.2
95,495	+		GFF4731	0.28	-3.0
95,495	+		GFF4731	0.28	+0.2
95,496	-		GFF4731	0.28	-1.8
95,496	-		GFF4731	0.28	-2.3