Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4669 and GFF4670 are separated by 89 nucleotides GFF4670 and GFF4671 overlap by 4 nucleotides GFF4671 and GFF4672 are separated by 47 nucleotides
GFF4669 - Pca operon transcriptional activator PcaQ, at 26,335 to 27,264
GFF4669
GFF4670 - Transcriptional regulator, AcrR family, at 27,354 to 27,959
GFF4670
GFF4671 - putative membrane protein, at 27,956 to 29,167
GFF4671
GFF4672 - Exoenzymes regulatory protein AepA precursor, at 29,215 to 30,900
GFF4672
Position (kb) 27
28
29
30 Strain fitness (log2 ratio) -2
-1
0
1
2 at 27.292 kb on + strand at 27.319 kb on + strand at 27.319 kb on + strand at 27.505 kb on - strand, within GFF4670 at 27.571 kb on - strand, within GFF4670 at 27.571 kb on - strand, within GFF4670 at 27.661 kb on + strand, within GFF4670 at 27.661 kb on - strand, within GFF4670 at 27.661 kb on - strand, within GFF4670 at 27.661 kb on - strand, within GFF4670 at 27.781 kb on + strand, within GFF4670 at 27.782 kb on - strand, within GFF4670 at 28.067 kb on + strand at 28.068 kb on - strand at 28.157 kb on + strand, within GFF4671 at 28.157 kb on + strand, within GFF4671 at 28.158 kb on - strand, within GFF4671 at 28.158 kb on - strand, within GFF4671 at 28.158 kb on - strand, within GFF4671 at 28.185 kb on - strand, within GFF4671 at 28.185 kb on - strand, within GFF4671 at 28.294 kb on - strand, within GFF4671 at 28.301 kb on + strand, within GFF4671 at 28.302 kb on - strand, within GFF4671 at 28.325 kb on + strand, within GFF4671 at 28.325 kb on + strand, within GFF4671 at 28.325 kb on + strand, within GFF4671 at 28.326 kb on - strand, within GFF4671 at 28.440 kb on - strand, within GFF4671 at 28.829 kb on + strand, within GFF4671 at 28.829 kb on + strand, within GFF4671 at 28.829 kb on + strand, within GFF4671 at 28.830 kb on - strand, within GFF4671 at 28.922 kb on + strand, within GFF4671 at 28.922 kb on + strand, within GFF4671 at 28.922 kb on + strand, within GFF4671 at 28.923 kb on - strand, within GFF4671 at 29.076 kb on - strand at 29.169 kb on - strand at 29.169 kb on - strand at 29.237 kb on + strand at 29.237 kb on + strand at 29.238 kb on - strand at 29.388 kb on - strand, within GFF4672 at 29.588 kb on + strand, within GFF4672 at 29.588 kb on + strand, within GFF4672 at 29.588 kb on + strand, within GFF4672 at 29.589 kb on - strand, within GFF4672 at 29.589 kb on - strand, within GFF4672 at 29.589 kb on - strand, within GFF4672 at 29.772 kb on - strand, within GFF4672 at 29.841 kb on - strand, within GFF4672 at 30.015 kb on - strand, within GFF4672 at 30.050 kb on + strand, within GFF4672 at 30.051 kb on - strand, within GFF4672 at 30.081 kb on - strand, within GFF4672 at 30.122 kb on + strand, within GFF4672
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 27,292 + +0.2 27,319 + -0.9 27,319 + +0.3 27,505 - GFF4670 0.25 +1.0 27,571 - GFF4670 0.36 -1.1 27,571 - GFF4670 0.36 +0.7 27,661 + GFF4670 0.51 -1.6 27,661 - GFF4670 0.51 +0.3 27,661 - GFF4670 0.51 +2.2 27,661 - GFF4670 0.51 -1.5 27,781 + GFF4670 0.70 +0.3 27,782 - GFF4670 0.71 +0.7 28,067 + +0.3 28,068 - -1.8 28,157 + GFF4671 0.17 -0.1 28,157 + GFF4671 0.17 +1.9 28,158 - GFF4671 0.17 -1.1 28,158 - GFF4671 0.17 -2.2 28,158 - GFF4671 0.17 +1.1 28,185 - GFF4671 0.19 +0.1 28,185 - GFF4671 0.19 +0.7 28,294 - GFF4671 0.28 +1.3 28,301 + GFF4671 0.28 +0.1 28,302 - GFF4671 0.29 +0.0 28,325 + GFF4671 0.30 -1.3 28,325 + GFF4671 0.30 -0.7 28,325 + GFF4671 0.30 -2.4 28,326 - GFF4671 0.31 -0.3 28,440 - GFF4671 0.40 -2.6 28,829 + GFF4671 0.72 -2.6 28,829 + GFF4671 0.72 +0.1 28,829 + GFF4671 0.72 -1.2 28,830 - GFF4671 0.72 -0.7 28,922 + GFF4671 0.80 +1.6 28,922 + GFF4671 0.80 -2.6 28,922 + GFF4671 0.80 -0.1 28,923 - GFF4671 0.80 +0.7 29,076 - -1.4 29,169 - -0.3 29,169 - +1.6 29,237 + -0.0 29,237 + -0.5 29,238 - +0.1 29,388 - GFF4672 0.10 -1.2 29,588 + GFF4672 0.22 -2.5 29,588 + GFF4672 0.22 +0.5 29,588 + GFF4672 0.22 -1.0 29,589 - GFF4672 0.22 +0.0 29,589 - GFF4672 0.22 -1.3 29,589 - GFF4672 0.22 -1.4 29,772 - GFF4672 0.33 -2.1 29,841 - GFF4672 0.37 +1.5 30,015 - GFF4672 0.47 -0.0 30,050 + GFF4672 0.50 +0.3 30,051 - GFF4672 0.50 +2.3 30,081 - GFF4672 0.51 +0.0 30,122 + GFF4672 0.54 +0.1
Or see this region's nucleotide sequence