Strain Fitness in Variovorax sp. SCN45 around GFF4644

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
102	+				+0.3
102	+				-0.7
102	+				+0.6
102	+				-1.4
103	-				-2.0
103	-				+0.7
103	-				+1.1
103	-				+1.3
103	-				+1.1
103	-				-0.1
103	-				-0.2
103	-				+0.9
103	-				+0.4
103	-				-0.8
103	-				-0.9
103	-				+1.5
103	-				-1.8
103	-				-1.6
238	-		GFF4644	0.56	+0.9
238	-		GFF4644	0.56	-0.8
238	-		GFF4644	0.56	+0.4
383	+				+0.2
384	-				-0.4
384	-				+0.4
384	-				-1.8
392	+				+0.6
428	+				-1.1
428	+				-1.3
429	-				+0.3
435	+				+0.1
435	+				-1.1
435	+				+0.1
436	-				-2.4
436	-				-0.3
436	-				-2.2
477	+				+0.3
477	+				-0.1
478	-				+0.3
478	-				-0.2
478	-				+1.8
478	-				-1.3
505	+				-1.7
505	+				-0.9
505	+				-0.1
506	-				+0.9
536	-				-0.4
600	+				+0.7
601	-				-2.4
757	+				+0.2
757	+				-1.0
757	+				-0.3
757	+				-0.1
867	+				+1.7
867	+				-0.0
867	+				-0.4
867	+				+0.5
868	-				-0.4
868	-				-2.5
868	-				-0.0
1,087	-		GFF4645	0.19	-1.1
1,176	+		GFF4645	0.24	+0.2
1,176	+		GFF4645	0.24	+0.3
1,176	+		GFF4645	0.24	-1.4
1,177	-		GFF4645	0.24	+0.6
1,177	-		GFF4645	0.24	-0.0
1,177	-		GFF4645	0.24	-0.9
1,201	-		GFF4645	0.26	+0.7