Strain Fitness in Variovorax sp. SCN45 around GFF4497

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4496 and GFF4497 overlap by 8 nucleotidesGFF4497 and GFF4498 are separated by 8 nucleotides GFF4496 - Uncharacterized MFS-type transporter, at 139,940 to 141,517 GFF4496 GFF4497 - FIG027115: Membrane protein, at 141,510 to 141,908 GFF4497 GFF4498 - Exoenzymes regulatory protein AepA precursor, at 141,917 to 143,911 GFF4498 Position (kb) 141 142Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 140.733 kb on + strand, within GFF4496at 140.863 kb on - strand, within GFF4496at 140.863 kb on - strand, within GFF4496at 140.964 kb on + strand, within GFF4496at 140.964 kb on + strand, within GFF4496at 140.964 kb on + strand, within GFF4496at 140.964 kb on + strand, within GFF4496at 140.964 kb on + strand, within GFF4496at 140.964 kb on + strand, within GFF4496at 140.964 kb on + strand, within GFF4496at 140.964 kb on + strand, within GFF4496at 140.965 kb on - strand, within GFF4496at 140.965 kb on - strand, within GFF4496at 140.965 kb on - strand, within GFF4496at 140.965 kb on - strand, within GFF4496at 140.965 kb on - strand, within GFF4496at 140.965 kb on - strand, within GFF4496at 140.965 kb on - strand, within GFF4496at 140.965 kb on - strand, within GFF4496at 140.965 kb on - strand, within GFF4496at 140.965 kb on - strand, within GFF4496at 140.965 kb on - strand, within GFF4496at 140.965 kb on - strand, within GFF4496at 140.965 kb on - strand, within GFF4496at 140.985 kb on + strand, within GFF4496at 140.985 kb on + strand, within GFF4496at 140.985 kb on + strand, within GFF4496at 140.985 kb on + strand, within GFF4496at 140.985 kb on + strand, within GFF4496at 140.986 kb on - strand, within GFF4496at 140.986 kb on - strand, within GFF4496at 141.186 kb on + strand, within GFF4496at 141.187 kb on + strand, within GFF4496at 141.187 kb on - strand, within GFF4496at 141.187 kb on - strand, within GFF4496at 141.187 kb on - strand, within GFF4496at 141.187 kb on - strand, within GFF4496at 141.187 kb on - strand, within GFF4496at 141.589 kb on + strand, within GFF4497at 141.847 kb on + strand, within GFF4497at 141.848 kb on - strand, within GFF4497at 141.848 kb on - strand, within GFF4497at 141.848 kb on - strand, within GFF4497at 142.110 kb on + strandat 142.111 kb on - strandat 142.197 kb on + strand, within GFF4498at 142.197 kb on + strand, within GFF4498at 142.197 kb on + strand, within GFF4498at 142.197 kb on + strand, within GFF4498at 142.198 kb on - strand, within GFF4498at 142.473 kb on + strand, within GFF4498at 142.473 kb on + strand, within GFF4498at 142.474 kb on - strand, within GFF4498at 142.474 kb on - strand, within GFF4498at 142.474 kb on - strand, within GFF4498at 142.474 kb on - strand, within GFF4498at 142.474 kb on - strand, within GFF4498at 142.474 kb on - strand, within GFF4498at 142.474 kb on - strand, within GFF4498at 142.573 kb on - strand, within GFF4498at 142.588 kb on - strand, within GFF4498at 142.588 kb on - strand, within GFF4498at 142.588 kb on - strand, within GFF4498at 142.599 kb on + strand, within GFF4498at 142.599 kb on + strand, within GFF4498at 142.667 kb on - strand, within GFF4498at 142.715 kb on - strand, within GFF4498at 142.715 kb on - strand, within GFF4498at 142.715 kb on - strand, within GFF4498at 142.715 kb on - strand, within GFF4498at 142.715 kb on - strand, within GFF4498at 142.767 kb on + strand, within GFF4498at 142.767 kb on + strand, within GFF4498at 142.767 kb on + strand, within GFF4498at 142.767 kb on + strand, within GFF4498at 142.767 kb on + strand, within GFF4498at 142.768 kb on - strand, within GFF4498at 142.768 kb on - strand, within GFF4498at 142.768 kb on - strand, within GFF4498

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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140,733 + GFF4496 0.50 +0.1
140,863 - GFF4496 0.58 -1.4
140,863 - GFF4496 0.58 +0.7
140,964 + GFF4496 0.65 -1.0
140,964 + GFF4496 0.65 -1.0
140,964 + GFF4496 0.65 -0.0
140,964 + GFF4496 0.65 -2.0
140,964 + GFF4496 0.65 -0.2
140,964 + GFF4496 0.65 -1.7
140,964 + GFF4496 0.65 -0.9
140,964 + GFF4496 0.65 +0.2
140,965 - GFF4496 0.65 -2.0
140,965 - GFF4496 0.65 -1.2
140,965 - GFF4496 0.65 -1.2
140,965 - GFF4496 0.65 -0.2
140,965 - GFF4496 0.65 -2.9
140,965 - GFF4496 0.65 -1.9
140,965 - GFF4496 0.65 -3.6
140,965 - GFF4496 0.65 -0.6
140,965 - GFF4496 0.65 -0.8
140,965 - GFF4496 0.65 -1.0
140,965 - GFF4496 0.65 -2.8
140,965 - GFF4496 0.65 +0.4
140,965 - GFF4496 0.65 +0.7
140,985 + GFF4496 0.66 +1.5
140,985 + GFF4496 0.66 -0.3
140,985 + GFF4496 0.66 +0.4
140,985 + GFF4496 0.66 +0.1
140,985 + GFF4496 0.66 -0.9
140,986 - GFF4496 0.66 -0.5
140,986 - GFF4496 0.66 +3.3
141,186 + GFF4496 0.79 -1.3
141,187 + GFF4496 0.79 -2.1
141,187 - GFF4496 0.79 -2.2
141,187 - GFF4496 0.79 +0.9
141,187 - GFF4496 0.79 +0.1
141,187 - GFF4496 0.79 +0.2
141,187 - GFF4496 0.79 -2.6
141,589 + GFF4497 0.20 -1.6
141,847 + GFF4497 0.84 -0.3
141,848 - GFF4497 0.85 -0.9
141,848 - GFF4497 0.85 +2.0
141,848 - GFF4497 0.85 -2.2
142,110 + -1.2
142,111 - -0.5
142,197 + GFF4498 0.14 -2.4
142,197 + GFF4498 0.14 +0.0
142,197 + GFF4498 0.14 -0.9
142,197 + GFF4498 0.14 +3.5
142,198 - GFF4498 0.14 -0.5
142,473 + GFF4498 0.28 -1.8
142,473 + GFF4498 0.28 -1.1
142,474 - GFF4498 0.28 +0.7
142,474 - GFF4498 0.28 +0.7
142,474 - GFF4498 0.28 -4.4
142,474 - GFF4498 0.28 -0.1
142,474 - GFF4498 0.28 -1.4
142,474 - GFF4498 0.28 -0.0
142,474 - GFF4498 0.28 +0.3
142,573 - GFF4498 0.33 -1.3
142,588 - GFF4498 0.34 -0.5
142,588 - GFF4498 0.34 -2.9
142,588 - GFF4498 0.34 +0.5
142,599 + GFF4498 0.34 +2.3
142,599 + GFF4498 0.34 +0.4
142,667 - GFF4498 0.38 -1.7
142,715 - GFF4498 0.40 +0.0
142,715 - GFF4498 0.40 +0.8
142,715 - GFF4498 0.40 -0.7
142,715 - GFF4498 0.40 -2.2
142,715 - GFF4498 0.40 -1.0
142,767 + GFF4498 0.43 -0.0
142,767 + GFF4498 0.43 +0.7
142,767 + GFF4498 0.43 -0.3
142,767 + GFF4498 0.43 -2.1
142,767 + GFF4498 0.43 -0.2
142,768 - GFF4498 0.43 -0.1
142,768 - GFF4498 0.43 +0.2
142,768 - GFF4498 0.43 +0.5

Or see this region's nucleotide sequence