Strain Fitness in Variovorax sp. SCN45 around GFF4263

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4262 and GFF4263 are separated by 126 nucleotidesGFF4263 and GFF4264 are separated by 109 nucleotides GFF4262 - hypothetical protein, at 179,748 to 180,893 GFF4262 GFF4263 - TonB-dependent siderophore receptor, at 181,020 to 183,482 GFF4263 GFF4264 - surface antigen gene, at 183,592 to 185,025 GFF4264 Position (kb) 181 182 183 184Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 180.246 kb on + strand, within GFF4262at 180.247 kb on - strand, within GFF4262at 180.247 kb on - strand, within GFF4262at 180.247 kb on - strand, within GFF4262at 180.247 kb on - strand, within GFF4262at 180.339 kb on + strand, within GFF4262at 180.340 kb on - strand, within GFF4262at 180.980 kb on - strandat 180.980 kb on - strandat 180.997 kb on + strandat 180.998 kb on - strandat 181.458 kb on + strand, within GFF4263at 181.459 kb on - strand, within GFF4263at 181.693 kb on - strand, within GFF4263at 181.693 kb on - strand, within GFF4263at 181.737 kb on + strand, within GFF4263at 181.737 kb on + strand, within GFF4263at 181.737 kb on + strand, within GFF4263at 181.738 kb on - strand, within GFF4263at 181.738 kb on - strand, within GFF4263at 181.738 kb on - strand, within GFF4263at 181.882 kb on - strand, within GFF4263at 182.008 kb on - strand, within GFF4263at 182.059 kb on - strand, within GFF4263at 182.064 kb on + strand, within GFF4263at 182.064 kb on + strand, within GFF4263at 182.151 kb on + strand, within GFF4263at 182.151 kb on + strand, within GFF4263at 182.151 kb on + strand, within GFF4263at 182.152 kb on - strand, within GFF4263at 182.394 kb on + strand, within GFF4263at 182.464 kb on - strand, within GFF4263at 182.470 kb on - strand, within GFF4263at 182.566 kb on - strand, within GFF4263at 182.566 kb on - strand, within GFF4263at 182.772 kb on + strand, within GFF4263at 182.787 kb on + strand, within GFF4263at 182.806 kb on - strand, within GFF4263at 183.118 kb on - strand, within GFF4263at 183.118 kb on - strand, within GFF4263at 183.123 kb on + strand, within GFF4263at 183.123 kb on + strand, within GFF4263at 183.123 kb on + strand, within GFF4263at 183.201 kb on + strand, within GFF4263at 183.202 kb on - strand, within GFF4263at 183.202 kb on - strand, within GFF4263at 183.252 kb on + strandat 183.271 kb on - strandat 183.271 kb on - strandat 183.282 kb on + strandat 183.283 kb on - strandat 183.340 kb on - strandat 183.399 kb on + strandat 183.402 kb on + strandat 183.402 kb on + strandat 183.402 kb on + strandat 183.402 kb on + strandat 183.420 kb on + strandat 183.429 kb on + strandat 183.430 kb on - strandat 183.435 kb on + strandat 183.471 kb on + strandat 183.471 kb on + strandat 183.471 kb on + strandat 183.471 kb on + strandat 183.508 kb on - strandat 183.778 kb on + strand, within GFF4264at 183.778 kb on + strand, within GFF4264at 183.779 kb on - strand, within GFF4264at 183.910 kb on + strand, within GFF4264at 183.910 kb on + strand, within GFF4264at 183.911 kb on - strand, within GFF4264at 184.045 kb on + strand, within GFF4264at 184.045 kb on + strand, within GFF4264at 184.045 kb on + strand, within GFF4264at 184.045 kb on + strand, within GFF4264at 184.046 kb on - strand, within GFF4264at 184.075 kb on + strand, within GFF4264at 184.139 kb on - strand, within GFF4264at 184.174 kb on + strand, within GFF4264at 184.175 kb on - strand, within GFF4264at 184.175 kb on - strand, within GFF4264at 184.175 kb on - strand, within GFF4264at 184.175 kb on - strand, within GFF4264at 184.178 kb on + strand, within GFF4264at 184.178 kb on + strand, within GFF4264at 184.178 kb on + strand, within GFF4264at 184.179 kb on - strand, within GFF4264at 184.179 kb on - strand, within GFF4264at 184.210 kb on + strand, within GFF4264at 184.319 kb on - strand, within GFF4264at 184.371 kb on + strand, within GFF4264at 184.372 kb on - strand, within GFF4264at 184.372 kb on - strand, within GFF4264at 184.372 kb on - strand, within GFF4264at 184.463 kb on - strand, within GFF4264at 184.463 kb on - strand, within GFF4264

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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180,246 + GFF4262 0.43 -0.5
180,247 - GFF4262 0.44 -0.7
180,247 - GFF4262 0.44 +0.3
180,247 - GFF4262 0.44 -2.2
180,247 - GFF4262 0.44 -0.4
180,339 + GFF4262 0.52 -0.9
180,340 - GFF4262 0.52 -0.7
180,980 - -0.1
180,980 - -0.1
180,997 + -0.7
180,998 - +0.4
181,458 + GFF4263 0.18 -1.3
181,459 - GFF4263 0.18 -0.8
181,693 - GFF4263 0.27 +0.7
181,693 - GFF4263 0.27 +1.4
181,737 + GFF4263 0.29 +0.9
181,737 + GFF4263 0.29 +1.0
181,737 + GFF4263 0.29 +0.3
181,738 - GFF4263 0.29 -1.3
181,738 - GFF4263 0.29 -1.4
181,738 - GFF4263 0.29 +0.2
181,882 - GFF4263 0.35 +0.4
182,008 - GFF4263 0.40 -0.3
182,059 - GFF4263 0.42 -0.1
182,064 + GFF4263 0.42 -3.2
182,064 + GFF4263 0.42 -0.2
182,151 + GFF4263 0.46 -0.5
182,151 + GFF4263 0.46 +2.5
182,151 + GFF4263 0.46 +0.3
182,152 - GFF4263 0.46 -2.0
182,394 + GFF4263 0.56 +0.6
182,464 - GFF4263 0.59 +0.3
182,470 - GFF4263 0.59 -0.9
182,566 - GFF4263 0.63 -0.2
182,566 - GFF4263 0.63 -0.6
182,772 + GFF4263 0.71 -1.7
182,787 + GFF4263 0.72 -0.5
182,806 - GFF4263 0.73 -0.6
183,118 - GFF4263 0.85 -2.2
183,118 - GFF4263 0.85 +0.3
183,123 + GFF4263 0.85 -0.3
183,123 + GFF4263 0.85 -0.8
183,123 + GFF4263 0.85 -2.8
183,201 + GFF4263 0.89 +0.3
183,202 - GFF4263 0.89 -1.1
183,202 - GFF4263 0.89 -1.1
183,252 + +1.3
183,271 - +0.3
183,271 - -1.1
183,282 + +0.0
183,283 - +0.0
183,340 - -2.1
183,399 + +0.0
183,402 + +0.7
183,402 + -2.8
183,402 + -0.7
183,402 + -2.1
183,420 + -0.1
183,429 + +0.5
183,430 - +0.3
183,435 + +0.7
183,471 + -1.0
183,471 + -0.9
183,471 + -1.1
183,471 + +0.0
183,508 - -2.1
183,778 + GFF4264 0.13 +0.3
183,778 + GFF4264 0.13 +0.7
183,779 - GFF4264 0.13 -2.2
183,910 + GFF4264 0.22 -0.9
183,910 + GFF4264 0.22 -2.2
183,911 - GFF4264 0.22 -1.7
184,045 + GFF4264 0.32 -1.0
184,045 + GFF4264 0.32 +0.4
184,045 + GFF4264 0.32 -2.2
184,045 + GFF4264 0.32 -1.0
184,046 - GFF4264 0.32 +1.1
184,075 + GFF4264 0.34 -0.1
184,139 - GFF4264 0.38 -2.1
184,174 + GFF4264 0.41 +0.7
184,175 - GFF4264 0.41 +0.6
184,175 - GFF4264 0.41 +2.0
184,175 - GFF4264 0.41 -1.0
184,175 - GFF4264 0.41 +0.6
184,178 + GFF4264 0.41 -0.6
184,178 + GFF4264 0.41 -1.6
184,178 + GFF4264 0.41 +0.0
184,179 - GFF4264 0.41 +0.7
184,179 - GFF4264 0.41 -0.7
184,210 + GFF4264 0.43 +0.4
184,319 - GFF4264 0.51 -2.0
184,371 + GFF4264 0.54 +3.0
184,372 - GFF4264 0.54 -0.2
184,372 - GFF4264 0.54 +0.3
184,372 - GFF4264 0.54 +0.5
184,463 - GFF4264 0.61 +0.5
184,463 - GFF4264 0.61 +0.6

Or see this region's nucleotide sequence