Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4096 and GFF4097 are separated by 3 nucleotides GFF4097 and GFF4098 are separated by 0 nucleotides GFF4098 and GFF4099 are separated by 364 nucleotides
GFF4096 - no description, at 307,285 to 308,307
GFF4096
GFF4097 - hypothetical protein, at 308,311 to 308,937
GFF4097
GFF4098 - hypothetical protein, at 308,938 to 309,126
GFF4098
GFF4099 - Ser/Thr protein phosphatase family protein, at 309,491 to 310,153
GFF4099
Position (kb) 308
309
310 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 308.061 kb on + strand, within GFF4096 at 308.129 kb on - strand, within GFF4096 at 308.129 kb on - strand, within GFF4096 at 308.881 kb on + strand at 308.882 kb on - strand at 308.882 kb on - strand at 309.048 kb on - strand, within GFF4098 at 309.048 kb on - strand, within GFF4098 at 309.048 kb on - strand, within GFF4098 at 309.083 kb on + strand, within GFF4098 at 309.084 kb on - strand, within GFF4098 at 309.256 kb on + strand at 309.308 kb on - strand at 309.308 kb on - strand at 309.492 kb on + strand at 309.571 kb on - strand, within GFF4099 at 309.587 kb on + strand, within GFF4099 at 309.588 kb on - strand, within GFF4099 at 309.796 kb on + strand, within GFF4099 at 309.880 kb on + strand, within GFF4099 at 309.922 kb on - strand, within GFF4099 at 309.922 kb on - strand, within GFF4099
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 308,061 + GFF4096 0.76 +0.5 308,129 - GFF4096 0.83 -0.1 308,129 - GFF4096 0.83 -2.8 308,881 + +0.8 308,882 - -1.2 308,882 - -1.7 309,048 - GFF4098 0.58 +0.6 309,048 - GFF4098 0.58 +2.1 309,048 - GFF4098 0.58 -0.7 309,083 + GFF4098 0.77 -0.2 309,084 - GFF4098 0.77 +0.7 309,256 + -2.3 309,308 - +1.9 309,308 - +0.1 309,492 + -1.3 309,571 - GFF4099 0.12 -0.7 309,587 + GFF4099 0.14 -0.5 309,588 - GFF4099 0.15 +1.4 309,796 + GFF4099 0.46 -0.5 309,880 + GFF4099 0.59 -1.0 309,922 - GFF4099 0.65 -2.0 309,922 - GFF4099 0.65 +0.3
Or see this region's nucleotide sequence