Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3970 and GFF3971 overlap by 1 nucleotides GFF3971 and GFF3972 are separated by 14 nucleotides GFF3972 and GFF3973 overlap by 4 nucleotides
GFF3970 - Ring hydroxylating dioxygenase, alpha subunit (EC 1.14.12.13), at 172,701 to 174,014
GFF3970
GFF3971 - Aromatic-ring-hydroxylating dioxygenase, beta subunit (EC 1.14.12.3), at 174,014 to 174,505
GFF3971
GFF3972 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 174,520 to 176,148
GFF3972
GFF3973 - FIG01198345: hypothetical protein, at 176,145 to 177,320
GFF3973
Position (kb) 174
175
176
177 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 173.547 kb on + strand, within GFF3970 at 173.547 kb on + strand, within GFF3970 at 173.548 kb on - strand, within GFF3970 at 173.548 kb on - strand, within GFF3970 at 173.784 kb on + strand, within GFF3970 at 173.784 kb on + strand, within GFF3970 at 173.784 kb on + strand, within GFF3970 at 173.784 kb on + strand, within GFF3970 at 173.785 kb on - strand, within GFF3970 at 174.387 kb on - strand, within GFF3971 at 174.700 kb on + strand, within GFF3972 at 175.025 kb on - strand, within GFF3972 at 175.075 kb on + strand, within GFF3972 at 175.076 kb on - strand, within GFF3972 at 175.642 kb on + strand, within GFF3972 at 175.990 kb on + strand at 175.991 kb on - strand at 175.993 kb on + strand at 176.008 kb on + strand at 176.208 kb on + strand at 176.209 kb on - strand at 176.565 kb on + strand, within GFF3973 at 176.566 kb on - strand, within GFF3973 at 176.613 kb on + strand, within GFF3973 at 176.613 kb on + strand, within GFF3973 at 176.614 kb on - strand, within GFF3973 at 176.614 kb on - strand, within GFF3973 at 176.614 kb on - strand, within GFF3973 at 176.626 kb on - strand, within GFF3973 at 176.730 kb on + strand, within GFF3973 at 176.731 kb on - strand, within GFF3973 at 176.731 kb on - strand, within GFF3973 at 176.947 kb on - strand, within GFF3973 at 176.994 kb on + strand, within GFF3973 at 176.994 kb on + strand, within GFF3973 at 176.994 kb on + strand, within GFF3973 at 176.995 kb on - strand, within GFF3973
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 173,547 + GFF3970 0.64 +1.0 173,547 + GFF3970 0.64 +2.3 173,548 - GFF3970 0.64 -0.9 173,548 - GFF3970 0.64 -1.4 173,784 + GFF3970 0.82 -1.9 173,784 + GFF3970 0.82 -0.6 173,784 + GFF3970 0.82 -1.7 173,784 + GFF3970 0.82 +0.7 173,785 - GFF3970 0.82 -0.2 174,387 - GFF3971 0.76 -0.2 174,700 + GFF3972 0.11 -3.1 175,025 - GFF3972 0.31 +2.9 175,075 + GFF3972 0.34 -1.1 175,076 - GFF3972 0.34 +0.7 175,642 + GFF3972 0.69 -2.0 175,990 + -1.2 175,991 - -1.4 175,993 + +1.4 176,008 + +1.3 176,208 + +0.4 176,209 - -1.2 176,565 + GFF3973 0.36 -0.9 176,566 - GFF3973 0.36 -2.3 176,613 + GFF3973 0.40 -1.8 176,613 + GFF3973 0.40 -0.7 176,614 - GFF3973 0.40 +0.7 176,614 - GFF3973 0.40 +0.4 176,614 - GFF3973 0.40 -1.2 176,626 - GFF3973 0.41 -2.0 176,730 + GFF3973 0.50 -2.0 176,731 - GFF3973 0.50 -0.7 176,731 - GFF3973 0.50 +0.4 176,947 - GFF3973 0.68 -3.2 176,994 + GFF3973 0.72 -2.8 176,994 + GFF3973 0.72 +0.5 176,994 + GFF3973 0.72 -0.2 176,995 - GFF3973 0.72 -1.7
Or see this region's nucleotide sequence