Strain Fitness in Variovorax sp. SCN45 around GFF3940

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3938 and GFF3939 overlap by 4 nucleotidesGFF3939 and GFF3940 are separated by 125 nucleotidesGFF3940 and GFF3941 are separated by 51 nucleotides GFF3938 - Intracellular protease, at 142,157 to 142,783 GFF3938 GFF3939 - Hydrolase, HAD superfamily, at 142,780 to 143,340 GFF3939 GFF3940 - putative membrane protein, at 143,466 to 144,557 GFF3940 GFF3941 - Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1), at 144,609 to 145,649 GFF3941 Position (kb) 143 144 145Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 142.553 kb on + strand, within GFF3938at 142.553 kb on + strand, within GFF3938at 142.553 kb on + strand, within GFF3938at 142.553 kb on + strand, within GFF3938at 142.553 kb on + strand, within GFF3938at 142.553 kb on + strand, within GFF3938at 142.553 kb on + strand, within GFF3938at 142.553 kb on + strand, within GFF3938at 142.553 kb on + strand, within GFF3938at 142.553 kb on + strand, within GFF3938at 142.553 kb on + strand, within GFF3938at 142.553 kb on + strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.767 kb on - strandat 142.767 kb on - strandat 142.767 kb on - strandat 142.934 kb on + strand, within GFF3939at 142.934 kb on + strand, within GFF3939at 142.934 kb on + strand, within GFF3939at 142.934 kb on + strand, within GFF3939at 142.934 kb on + strand, within GFF3939at 142.934 kb on + strand, within GFF3939at 142.934 kb on + strand, within GFF3939at 142.934 kb on + strand, within GFF3939at 142.934 kb on + strand, within GFF3939at 142.934 kb on + strand, within GFF3939at 142.935 kb on - strand, within GFF3939at 142.935 kb on - strand, within GFF3939at 143.037 kb on + strand, within GFF3939at 143.037 kb on + strand, within GFF3939at 143.187 kb on + strand, within GFF3939at 143.258 kb on + strand, within GFF3939at 143.258 kb on + strand, within GFF3939at 143.258 kb on + strand, within GFF3939at 143.259 kb on - strand, within GFF3939at 143.259 kb on - strand, within GFF3939at 143.259 kb on - strand, within GFF3939at 143.259 kb on - strand, within GFF3939at 143.286 kb on - strandat 143.503 kb on + strandat 143.503 kb on + strandat 143.503 kb on + strandat 143.503 kb on + strandat 143.503 kb on + strandat 143.503 kb on + strandat 143.503 kb on + strandat 143.503 kb on + strandat 143.504 kb on - strandat 143.504 kb on - strandat 143.504 kb on - strandat 143.509 kb on + strandat 143.509 kb on + strandat 143.510 kb on - strandat 143.510 kb on - strandat 143.512 kb on + strandat 143.512 kb on + strandat 143.512 kb on + strandat 143.513 kb on - strandat 143.513 kb on - strandat 143.513 kb on - strandat 143.632 kb on + strand, within GFF3940at 143.632 kb on + strand, within GFF3940at 143.632 kb on + strand, within GFF3940at 143.632 kb on + strand, within GFF3940at 143.633 kb on - strand, within GFF3940at 143.633 kb on - strand, within GFF3940at 143.633 kb on - strand, within GFF3940at 143.633 kb on - strand, within GFF3940at 143.633 kb on - strand, within GFF3940at 143.745 kb on - strand, within GFF3940at 143.745 kb on - strand, within GFF3940at 143.745 kb on - strand, within GFF3940at 143.792 kb on - strand, within GFF3940at 144.004 kb on + strand, within GFF3940at 144.004 kb on + strand, within GFF3940at 144.004 kb on + strand, within GFF3940at 144.004 kb on + strand, within GFF3940at 144.004 kb on + strand, within GFF3940at 144.005 kb on - strand, within GFF3940at 144.005 kb on - strand, within GFF3940at 144.005 kb on - strand, within GFF3940at 144.005 kb on - strand, within GFF3940at 144.005 kb on - strand, within GFF3940at 144.005 kb on - strand, within GFF3940at 144.005 kb on - strand, within GFF3940at 144.005 kb on - strand, within GFF3940at 144.005 kb on - strand, within GFF3940at 144.005 kb on - strand, within GFF3940at 144.005 kb on - strand, within GFF3940at 144.005 kb on - strand, within GFF3940at 144.005 kb on - strand, within GFF3940at 144.073 kb on + strand, within GFF3940at 144.073 kb on + strand, within GFF3940at 144.073 kb on + strand, within GFF3940at 144.073 kb on + strand, within GFF3940at 144.073 kb on + strand, within GFF3940at 144.073 kb on + strand, within GFF3940at 144.074 kb on - strand, within GFF3940at 144.074 kb on - strand, within GFF3940at 144.074 kb on - strand, within GFF3940at 144.074 kb on - strand, within GFF3940at 144.118 kb on + strand, within GFF3940at 144.118 kb on + strand, within GFF3940at 144.118 kb on + strand, within GFF3940at 144.118 kb on + strand, within GFF3940at 144.118 kb on + strand, within GFF3940at 144.138 kb on + strand, within GFF3940at 144.138 kb on + strand, within GFF3940at 144.138 kb on + strand, within GFF3940at 144.139 kb on - strand, within GFF3940at 144.139 kb on - strand, within GFF3940at 144.139 kb on - strand, within GFF3940at 144.175 kb on + strand, within GFF3940at 144.175 kb on + strand, within GFF3940at 144.175 kb on + strand, within GFF3940at 144.176 kb on - strand, within GFF3940at 144.176 kb on - strand, within GFF3940at 144.176 kb on - strand, within GFF3940at 144.193 kb on + strand, within GFF3940at 144.217 kb on + strand, within GFF3940at 144.217 kb on + strand, within GFF3940at 144.217 kb on + strand, within GFF3940at 144.217 kb on + strand, within GFF3940at 144.217 kb on + strand, within GFF3940at 144.217 kb on + strand, within GFF3940at 144.217 kb on + strand, within GFF3940at 144.218 kb on - strand, within GFF3940at 144.218 kb on - strand, within GFF3940at 144.218 kb on - strand, within GFF3940at 144.218 kb on - strand, within GFF3940at 144.466 kb on + strandat 144.466 kb on + strandat 144.466 kb on + strandat 144.466 kb on + strandat 144.466 kb on + strandat 144.466 kb on + strandat 144.466 kb on + strandat 144.466 kb on + strandat 144.467 kb on - strandat 144.467 kb on - strandat 144.467 kb on - strandat 144.467 kb on - strandat 144.467 kb on - strandat 144.962 kb on - strand, within GFF3941at 144.962 kb on - strand, within GFF3941at 144.962 kb on - strand, within GFF3941at 145.183 kb on + strand, within GFF3941at 145.184 kb on - strand, within GFF3941at 145.198 kb on + strand, within GFF3941at 145.199 kb on - strand, within GFF3941at 145.199 kb on - strand, within GFF3941at 145.321 kb on + strand, within GFF3941at 145.321 kb on + strand, within GFF3941at 145.321 kb on + strand, within GFF3941at 145.322 kb on - strand, within GFF3941at 145.481 kb on - strand, within GFF3941

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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142,553 + GFF3938 0.63 +1.4
142,553 + GFF3938 0.63 -0.9
142,553 + GFF3938 0.63 -0.7
142,553 + GFF3938 0.63 +0.3
142,553 + GFF3938 0.63 -2.3
142,553 + GFF3938 0.63 -1.8
142,553 + GFF3938 0.63 -0.9
142,553 + GFF3938 0.63 +1.1
142,553 + GFF3938 0.63 -1.2
142,553 + GFF3938 0.63 -0.0
142,553 + GFF3938 0.63 -0.4
142,553 + GFF3938 0.63 +0.1
142,554 - GFF3938 0.63 -0.3
142,554 - GFF3938 0.63 +1.0
142,554 - GFF3938 0.63 +0.5
142,554 - GFF3938 0.63 -0.6
142,554 - GFF3938 0.63 -0.9
142,554 - GFF3938 0.63 -1.8
142,554 - GFF3938 0.63 +1.5
142,554 - GFF3938 0.63 +0.5
142,554 - GFF3938 0.63 +1.6
142,554 - GFF3938 0.63 +0.1
142,554 - GFF3938 0.63 -1.5
142,554 - GFF3938 0.63 -1.2
142,554 - GFF3938 0.63 -3.9
142,554 - GFF3938 0.63 -0.4
142,554 - GFF3938 0.63 +0.2
142,554 - GFF3938 0.63 +0.1
142,554 - GFF3938 0.63 -1.7
142,767 - +0.1
142,767 - +1.1
142,767 - -1.8
142,934 + GFF3939 0.27 -0.6
142,934 + GFF3939 0.27 +1.6
142,934 + GFF3939 0.27 +0.6
142,934 + GFF3939 0.27 +0.4
142,934 + GFF3939 0.27 +0.4
142,934 + GFF3939 0.27 +0.5
142,934 + GFF3939 0.27 -0.3
142,934 + GFF3939 0.27 +1.0
142,934 + GFF3939 0.27 +1.2
142,934 + GFF3939 0.27 +1.5
142,935 - GFF3939 0.28 +0.1
142,935 - GFF3939 0.28 -1.5
143,037 + GFF3939 0.46 -1.6
143,037 + GFF3939 0.46 +1.1
143,187 + GFF3939 0.73 -0.2
143,258 + GFF3939 0.85 -1.5
143,258 + GFF3939 0.85 -2.0
143,258 + GFF3939 0.85 -2.1
143,259 - GFF3939 0.85 +1.2
143,259 - GFF3939 0.85 -1.2
143,259 - GFF3939 0.85 -0.3
143,259 - GFF3939 0.85 -2.5
143,286 - +2.3
143,503 + -1.3
143,503 + +2.1
143,503 + +1.1
143,503 + +2.1
143,503 + -1.6
143,503 + -1.2
143,503 + +0.5
143,503 + +2.4
143,504 - +0.5
143,504 - +0.0
143,504 - -0.2
143,509 + +0.1
143,509 + +0.1
143,510 - +0.7
143,510 - +0.1
143,512 + +0.5
143,512 + +0.1
143,512 + -0.1
143,513 - +1.4
143,513 - +0.4
143,513 - -2.1
143,632 + GFF3940 0.15 -0.9
143,632 + GFF3940 0.15 -0.4
143,632 + GFF3940 0.15 -0.9
143,632 + GFF3940 0.15 -3.0
143,633 - GFF3940 0.15 -1.7
143,633 - GFF3940 0.15 -1.2
143,633 - GFF3940 0.15 +1.1
143,633 - GFF3940 0.15 -1.1
143,633 - GFF3940 0.15 -0.7
143,745 - GFF3940 0.26 -0.7
143,745 - GFF3940 0.26 -1.2
143,745 - GFF3940 0.26 +0.1
143,792 - GFF3940 0.30 -1.1
144,004 + GFF3940 0.49 -1.0
144,004 + GFF3940 0.49 -0.5
144,004 + GFF3940 0.49 +0.8
144,004 + GFF3940 0.49 +0.1
144,004 + GFF3940 0.49 +0.9
144,005 - GFF3940 0.49 -0.1
144,005 - GFF3940 0.49 +0.3
144,005 - GFF3940 0.49 -2.2
144,005 - GFF3940 0.49 +0.3
144,005 - GFF3940 0.49 -1.1
144,005 - GFF3940 0.49 +2.1
144,005 - GFF3940 0.49 -1.2
144,005 - GFF3940 0.49 +2.0
144,005 - GFF3940 0.49 -2.8
144,005 - GFF3940 0.49 +0.1
144,005 - GFF3940 0.49 -3.1
144,005 - GFF3940 0.49 -0.7
144,005 - GFF3940 0.49 -1.2
144,073 + GFF3940 0.56 -2.0
144,073 + GFF3940 0.56 -0.5
144,073 + GFF3940 0.56 -0.5
144,073 + GFF3940 0.56 -0.5
144,073 + GFF3940 0.56 -2.7
144,073 + GFF3940 0.56 -0.4
144,074 - GFF3940 0.56 +0.8
144,074 - GFF3940 0.56 -0.9
144,074 - GFF3940 0.56 +2.0
144,074 - GFF3940 0.56 +1.1
144,118 + GFF3940 0.60 -0.9
144,118 + GFF3940 0.60 +0.2
144,118 + GFF3940 0.60 -0.3
144,118 + GFF3940 0.60 +0.9
144,118 + GFF3940 0.60 -0.3
144,138 + GFF3940 0.62 -2.3
144,138 + GFF3940 0.62 +0.5
144,138 + GFF3940 0.62 -1.5
144,139 - GFF3940 0.62 -1.0
144,139 - GFF3940 0.62 +0.4
144,139 - GFF3940 0.62 -0.2
144,175 + GFF3940 0.65 -1.0
144,175 + GFF3940 0.65 -0.9
144,175 + GFF3940 0.65 -0.7
144,176 - GFF3940 0.65 -1.4
144,176 - GFF3940 0.65 +0.5
144,176 - GFF3940 0.65 +0.5
144,193 + GFF3940 0.67 -0.5
144,217 + GFF3940 0.69 -1.3
144,217 + GFF3940 0.69 -3.9
144,217 + GFF3940 0.69 -0.2
144,217 + GFF3940 0.69 -1.5
144,217 + GFF3940 0.69 -0.7
144,217 + GFF3940 0.69 -0.5
144,217 + GFF3940 0.69 +1.1
144,218 - GFF3940 0.69 -2.0
144,218 - GFF3940 0.69 -2.0
144,218 - GFF3940 0.69 +1.1
144,218 - GFF3940 0.69 -0.2
144,466 + +1.3
144,466 + +0.4
144,466 + -1.0
144,466 + -3.5
144,466 + -1.3
144,466 + -0.1
144,466 + +0.5
144,466 + -2.3
144,467 - -0.3
144,467 - +0.1
144,467 - -1.8
144,467 - -0.9
144,467 - -1.0
144,962 - GFF3941 0.34 -1.9
144,962 - GFF3941 0.34 -2.3
144,962 - GFF3941 0.34 -1.5
145,183 + GFF3941 0.55 -2.7
145,184 - GFF3941 0.55 -2.0
145,198 + GFF3941 0.57 -3.3
145,199 - GFF3941 0.57 -2.0
145,199 - GFF3941 0.57 -1.2
145,321 + GFF3941 0.68 -1.8
145,321 + GFF3941 0.68 -2.1
145,321 + GFF3941 0.68 -2.3
145,322 - GFF3941 0.68 -2.6
145,481 - GFF3941 0.84 -2.3

Or see this region's nucleotide sequence