Strain Fitness in Variovorax sp. SCN45

Strain Fitness in Variovorax sp. SCN45 around GFF3849

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	Community=guar; Passage=4
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48,840	+	GFF3847	0.81	-0.9
48,840	+	GFF3847	0.81	-0.5
48,840	+	GFF3847	0.81	-2.9
48,840	+	GFF3847	0.81	+1.5
48,840	+	GFF3847	0.81	+1.8
48,840	+	GFF3847	0.81	-1.6
48,840	+	GFF3847	0.81	+0.9
48,840	+	GFF3847	0.81	-1.9
48,841	-	GFF3847	0.81	-1.2
48,841	-	GFF3847	0.81	-2.8
48,841	-	GFF3847	0.81	-0.2
48,980	+			-1.2
48,980	+			+1.3
48,980	+			-2.6
48,980	+			-0.3
48,981	-			-1.0
48,981	-			+1.1
48,981	-			-0.2
48,981	-			+0.2
48,981	-			-2.1
49,061	+			-2.6
49,061	+			-1.6
49,061	+			-0.2
49,061	+			-1.5
49,061	+			+0.5
49,061	+			+1.6
49,061	+			-2.5
49,062	-			-2.3
49,062	-			+0.0
49,062	-			-1.5
49,062	-			-0.1
49,102	+			-1.3
49,103	-			-2.3
49,103	-			+0.3
49,255	+	GFF3848	0.32	-0.7
49,255	+	GFF3848	0.32	-1.4
49,256	-	GFF3848	0.32	+0.4
49,256	-	GFF3848	0.32	-2.3
49,276	+	GFF3848	0.35	-2.2
49,282	+	GFF3848	0.36	-0.9
49,283	-	GFF3848	0.36	+0.5
49,283	-	GFF3848	0.36	-1.6
49,283	-	GFF3848	0.36	-1.2
49,283	-	GFF3848	0.36	+0.3
49,288	+	GFF3848	0.37	+0.1
49,288	+	GFF3848	0.37	-2.2
49,288	+	GFF3848	0.37	-0.8
49,288	+	GFF3848	0.37	+0.1
49,288	+	GFF3848	0.37	-0.8
49,288	+	GFF3848	0.37	-3.0
49,288	+	GFF3848	0.37	-1.3
49,288	+	GFF3848	0.37	+0.8
49,288	+	GFF3848	0.37	-2.0
49,288	+	GFF3848	0.37	-1.2
49,288	+	GFF3848	0.37	-3.4
49,289	-	GFF3848	0.37	-1.3
49,289	-	GFF3848	0.37	-1.5
49,289	-	GFF3848	0.37	-1.0
49,289	-	GFF3848	0.37	+0.4
49,289	-	GFF3848	0.37	-0.7
49,289	-	GFF3848	0.37	-0.9
49,289	-	GFF3848	0.37	+1.9
49,289	-	GFF3848	0.37	-0.0
49,289	-	GFF3848	0.37	+0.1
49,289	-	GFF3848	0.37	-0.9
49,289	-	GFF3848	0.37	-0.1
49,289	-	GFF3848	0.37	-1.2
49,455	+	GFF3848	0.62	-0.6
49,456	-	GFF3848	0.62	+1.6
49,456	-	GFF3848	0.62	+0.2
49,456	-	GFF3848	0.62	-0.9
49,612	+	GFF3848	0.85	-0.5
49,612	+	GFF3848	0.85	-2.2
49,612	+	GFF3848	0.85	+2.0
49,612	+	GFF3848	0.85	-1.6
49,612	+	GFF3848	0.85	-1.8
49,612	+	GFF3848	0.85	-0.4
49,612	+	GFF3848	0.85	+0.5
49,612	+	GFF3848	0.85	+2.1
49,612	+	GFF3848	0.85	-0.2
49,613	-	GFF3848	0.85	+0.6
49,613	-	GFF3848	0.85	-2.1
49,613	-	GFF3848	0.85	+0.2
49,613	-	GFF3848	0.85	-1.7
49,613	-	GFF3848	0.85	+0.4
49,613	-	GFF3848	0.85	+0.8
49,613	-	GFF3848	0.85	+1.3
49,613	-	GFF3848	0.85	-0.6
49,613	-	GFF3848	0.85	-2.6
49,613	-	GFF3848	0.85	-0.8
49,613	-	GFF3848	0.85	+1.4
49,695	+			+0.1
49,695	+			+0.5
49,696	-			-1.7
49,696	-			-1.8
49,972	+	GFF3849	0.65	+0.4
49,972	+	GFF3849	0.65	+0.4
49,972	+	GFF3849	0.65	-0.8
49,972	+	GFF3849	0.65	+0.6
50,067	+			-1.1
50,067	+			+0.2
50,067	+			+1.2
50,067	+			+0.1
50,067	+			+1.7
50,068	-			+0.1
50,068	-			-0.1
50,068	-			+0.1
50,068	-			-2.9
50,068	-			-2.3
50,068	-			-0.2
50,558	+	GFF3850	0.45	-0.9
50,558	+	GFF3850	0.45	-0.6
50,558	+	GFF3850	0.45	+2.1
50,558	+	GFF3850	0.45	-0.2
50,558	+	GFF3850	0.45	+0.6
50,558	+	GFF3850	0.45	-2.0
50,558	+	GFF3850	0.45	-0.2
50,558	+	GFF3850	0.45	-2.8
50,558	+	GFF3850	0.45	-1.3
50,558	+	GFF3850	0.45	+0.5
50,558	+	GFF3850	0.45	+1.9
50,559	-	GFF3850	0.45	-2.6
50,559	-	GFF3850	0.45	+0.7
50,559	-	GFF3850	0.45	+1.3
50,559	-	GFF3850	0.45	-1.3
50,559	-	GFF3850	0.45	+0.8
50,559	-	GFF3850	0.45	-1.7
50,559	-	GFF3850	0.45	+1.3
50,573	+	GFF3850	0.46	-0.8
50,573	+	GFF3850	0.46	-0.0
50,573	+	GFF3850	0.46	-1.9
50,573	+	GFF3850	0.46	+1.9
50,573	+	GFF3850	0.46	-0.5
50,573	+	GFF3850	0.46	-0.5
50,574	-	GFF3850	0.46	+0.6
50,574	-	GFF3850	0.46	-0.2
50,574	-	GFF3850	0.46	-0.5
50,574	-	GFF3850	0.46	+0.8
50,574	-	GFF3850	0.46	+0.1
50,574	-	GFF3850	0.46	-0.3
50,574	-	GFF3850	0.46	+0.5
50,609	+	GFF3850	0.50	+0.4
50,609	+	GFF3850	0.50	+2.1
50,609	+	GFF3850	0.50	+0.1
50,609	+	GFF3850	0.50	-1.2
50,610	-	GFF3850	0.50	-1.2
50,610	-	GFF3850	0.50	-1.5
50,610	-	GFF3850	0.50	-0.2
50,610	-	GFF3850	0.50	-1.1
50,612	+	GFF3850	0.50	+0.2
50,612	+	GFF3850	0.50	-1.5
50,612	+	GFF3850	0.50	+0.3
50,612	+	GFF3850	0.50	-0.5
50,612	+	GFF3850	0.50	-2.7
50,612	+	GFF3850	0.50	-1.0
50,612	+	GFF3850	0.50	-0.3
50,612	+	GFF3850	0.50	-0.2
50,612	+	GFF3850	0.50	+0.6
50,612	+	GFF3850	0.50	+0.3
50,612	+	GFF3850	0.50	+0.4
50,612	+	GFF3850	0.50	-0.2
50,612	+	GFF3850	0.50	-0.4
50,612	+	GFF3850	0.50	-1.0
50,612	+	GFF3850	0.50	+1.1
50,612	+	GFF3850	0.50	+0.5
50,612	+	GFF3850	0.50	+0.2
50,612	+	GFF3850	0.50	+1.5
50,612	+	GFF3850	0.50	-2.5
50,613	-	GFF3850	0.50	-2.9
50,613	-	GFF3850	0.50	-0.0
50,613	-	GFF3850	0.50	-1.9
50,613	-	GFF3850	0.50	-0.9
50,613	-	GFF3850	0.50	+0.3
50,613	-	GFF3850	0.50	-0.2
50,613	-	GFF3850	0.50	+0.5
50,613	-	GFF3850	0.50	-1.7
50,613	-	GFF3850	0.50	+1.5
50,613	-	GFF3850	0.50	-1.8
50,613	-	GFF3850	0.50	+2.3
50,613	-	GFF3850	0.50	+0.2
50,613	-	GFF3850	0.50	+0.7
50,613	-	GFF3850	0.50	-2.5
50,613	-	GFF3850	0.50	-2.2
50,613	-	GFF3850	0.50	-0.7
50,613	-	GFF3850	0.50	+0.5
50,613	-	GFF3850	0.50	-0.6
50,639	+	GFF3850	0.53	-2.7
50,639	+	GFF3850	0.53	-0.0
50,639	+	GFF3850	0.53	-2.5
50,639	+	GFF3850	0.53	+1.0
50,639	+	GFF3850	0.53	+0.5
50,639	+	GFF3850	0.53	-0.5
50,639	+	GFF3850	0.53	+1.4
50,639	+	GFF3850	0.53	-1.0
50,639	+	GFF3850	0.53	-0.7
50,639	+	GFF3850	0.53	-0.5
50,640	-	GFF3850	0.53	-1.2
50,640	-	GFF3850	0.53	+0.1
50,640	-	GFF3850	0.53	-0.3
50,640	-	GFF3850	0.53	-1.3
50,640	-	GFF3850	0.53	-0.5
50,939	+	GFF3850	0.82	+0.1
50,972	+	GFF3850	0.86	-0.6
50,972	+	GFF3850	0.86	-2.2
50,973	-	GFF3850	0.86	-1.5
51,014	+	GFF3850	0.90	-0.0
51,014	+	GFF3850	0.90	+0.8
51,014	+	GFF3850	0.90	+0.2
51,014	+	GFF3850	0.90	+0.1
51,014	+	GFF3850	0.90	+1.6
51,015	-	GFF3850	0.90	+1.4
51,015	-	GFF3850	0.90	+0.5
51,015	-	GFF3850	0.90	-0.5

Or see this region's nucleotide sequence