Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3674 and GFF3675 are separated by 7 nucleotides GFF3675 and GFF3676 overlap by 4 nucleotides GFF3676 and GFF3677 overlap by 4 nucleotides GFF3677 and GFF3678 overlap by 4 nucleotides
GFF3674 - Lipoyl synthase (EC 2.8.1.8), at 175,678 to 176,679
GFF3674
GFF3675 - Octanoate-[acyl-carrier-protein]-protein-N-octano yltransferase (EC 2.3.1.181), at 176,687 to 177,415
GFF3675
GFF3676 - Outer membrane protein romA, at 177,412 to 178,608
GFF3676
GFF3677 - Proposed lipoate regulatory protein YbeD, at 178,605 to 178,913
GFF3677
GFF3678 - D-alanine aminotransferase (EC 2.6.1.21), at 178,910 to 179,803
GFF3678
Position (kb) 177
178
179 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 176.683 kb on + strand at 176.683 kb on + strand at 176.683 kb on + strand at 176.683 kb on + strand at 176.683 kb on + strand at 176.683 kb on + strand at 176.684 kb on - strand at 176.684 kb on - strand at 176.684 kb on - strand at 176.684 kb on - strand at 176.684 kb on - strand at 176.684 kb on - strand at 176.684 kb on - strand at 176.684 kb on - strand at 176.684 kb on - strand at 176.684 kb on - strand at 176.684 kb on - strand at 176.684 kb on - strand at 176.684 kb on - strand at 177.662 kb on + strand, within GFF3676 at 177.662 kb on + strand, within GFF3676 at 177.663 kb on - strand, within GFF3676 at 177.663 kb on - strand, within GFF3676 at 177.663 kb on - strand, within GFF3676 at 177.663 kb on - strand, within GFF3676 at 177.761 kb on + strand, within GFF3676 at 177.761 kb on + strand, within GFF3676 at 177.779 kb on + strand, within GFF3676 at 177.779 kb on + strand, within GFF3676 at 177.779 kb on + strand, within GFF3676 at 177.780 kb on - strand, within GFF3676 at 177.780 kb on - strand, within GFF3676 at 177.780 kb on - strand, within GFF3676 at 177.780 kb on - strand, within GFF3676 at 177.780 kb on - strand, within GFF3676 at 177.830 kb on + strand, within GFF3676 at 178.118 kb on + strand, within GFF3676 at 178.118 kb on + strand, within GFF3676 at 178.119 kb on - strand, within GFF3676 at 178.119 kb on - strand, within GFF3676 at 178.119 kb on - strand, within GFF3676 at 178.119 kb on - strand, within GFF3676 at 178.150 kb on - strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.526 kb on + strand at 178.526 kb on + strand at 178.526 kb on + strand at 178.526 kb on + strand at 178.526 kb on + strand at 178.526 kb on + strand at 178.526 kb on + strand at 178.527 kb on - strand at 178.527 kb on - strand at 178.527 kb on - strand at 178.527 kb on - strand at 178.527 kb on - strand at 178.527 kb on - strand at 178.527 kb on - strand at 178.527 kb on - strand at 178.527 kb on - strand at 178.527 kb on - strand at 178.529 kb on + strand at 178.529 kb on + strand at 178.705 kb on + strand, within GFF3677 at 178.706 kb on - strand, within GFF3677 at 178.706 kb on - strand, within GFF3677 at 178.943 kb on + strand at 178.943 kb on + strand at 178.943 kb on + strand at 178.943 kb on + strand at 178.943 kb on + strand at 178.943 kb on + strand at 178.943 kb on + strand at 178.944 kb on - strand at 178.944 kb on - strand at 178.944 kb on - strand at 178.944 kb on - strand at 178.944 kb on - strand at 178.944 kb on - strand at 178.959 kb on + strand at 178.960 kb on - strand at 178.960 kb on - strand at 178.960 kb on - strand at 178.968 kb on + strand at 178.968 kb on + strand at 178.968 kb on + strand at 178.968 kb on + strand at 178.968 kb on + strand at 178.969 kb on - strand at 178.969 kb on - strand at 178.969 kb on - strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.981 kb on - strand at 178.981 kb on - strand at 178.981 kb on - strand at 178.981 kb on - strand at 178.981 kb on - strand at 178.981 kb on - strand at 178.981 kb on - strand at 178.981 kb on - strand at 179.008 kb on + strand, within GFF3678 at 179.008 kb on + strand, within GFF3678 at 179.008 kb on + strand, within GFF3678 at 179.009 kb on - strand, within GFF3678 at 179.043 kb on + strand, within GFF3678 at 179.511 kb on + strand, within GFF3678 at 179.511 kb on + strand, within GFF3678 at 179.511 kb on + strand, within GFF3678 at 179.512 kb on - strand, within GFF3678 at 179.512 kb on - strand, within GFF3678 at 179.512 kb on - strand, within GFF3678
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 176,683 + -1.2 176,683 + +1.2 176,683 + +0.8 176,683 + +1.3 176,683 + +0.6 176,683 + +2.8 176,684 - -1.8 176,684 - +0.2 176,684 - +0.1 176,684 - -1.7 176,684 - -0.4 176,684 - -0.4 176,684 - +3.0 176,684 - -2.2 176,684 - -2.2 176,684 - -0.8 176,684 - -1.2 176,684 - -0.2 176,684 - +0.4 177,662 + GFF3676 0.21 -1.0 177,662 + GFF3676 0.21 +0.7 177,663 - GFF3676 0.21 -0.3 177,663 - GFF3676 0.21 -1.7 177,663 - GFF3676 0.21 -0.2 177,663 - GFF3676 0.21 -2.1 177,761 + GFF3676 0.29 +0.8 177,761 + GFF3676 0.29 +0.4 177,779 + GFF3676 0.31 -3.1 177,779 + GFF3676 0.31 +1.1 177,779 + GFF3676 0.31 +0.1 177,780 - GFF3676 0.31 +0.4 177,780 - GFF3676 0.31 -0.3 177,780 - GFF3676 0.31 -0.7 177,780 - GFF3676 0.31 -0.1 177,780 - GFF3676 0.31 +0.7 177,830 + GFF3676 0.35 +0.8 178,118 + GFF3676 0.59 +1.0 178,118 + GFF3676 0.59 -1.6 178,119 - GFF3676 0.59 +0.0 178,119 - GFF3676 0.59 -1.3 178,119 - GFF3676 0.59 -2.9 178,119 - GFF3676 0.59 +0.6 178,150 - GFF3676 0.62 +0.1 178,478 + GFF3676 0.89 -0.8 178,478 + GFF3676 0.89 -1.2 178,478 + GFF3676 0.89 -0.0 178,478 + GFF3676 0.89 +0.2 178,478 + GFF3676 0.89 +0.9 178,478 + GFF3676 0.89 -1.4 178,478 + GFF3676 0.89 +3.1 178,478 + GFF3676 0.89 -3.2 178,478 + GFF3676 0.89 +0.3 178,478 + GFF3676 0.89 -2.6 178,478 + GFF3676 0.89 +1.3 178,478 + GFF3676 0.89 -0.5 178,478 + GFF3676 0.89 +0.5 178,478 + GFF3676 0.89 +0.2 178,478 + GFF3676 0.89 -2.8 178,478 + GFF3676 0.89 +0.4 178,478 + GFF3676 0.89 +1.4 178,478 + GFF3676 0.89 -0.1 178,478 + GFF3676 0.89 -0.6 178,479 - GFF3676 0.89 -0.4 178,479 - GFF3676 0.89 -0.2 178,479 - GFF3676 0.89 -2.4 178,479 - GFF3676 0.89 +1.7 178,479 - GFF3676 0.89 +1.0 178,479 - GFF3676 0.89 -0.3 178,479 - GFF3676 0.89 +0.4 178,479 - GFF3676 0.89 -0.8 178,479 - GFF3676 0.89 +0.3 178,479 - GFF3676 0.89 -0.3 178,479 - GFF3676 0.89 +0.3 178,479 - GFF3676 0.89 +1.1 178,479 - GFF3676 0.89 +1.7 178,479 - GFF3676 0.89 +0.1 178,479 - GFF3676 0.89 +0.9 178,479 - GFF3676 0.89 -2.7 178,479 - GFF3676 0.89 +0.2 178,479 - GFF3676 0.89 -2.2 178,479 - GFF3676 0.89 -0.1 178,479 - GFF3676 0.89 -0.2 178,479 - GFF3676 0.89 -0.6 178,479 - GFF3676 0.89 +0.3 178,479 - GFF3676 0.89 +1.3 178,479 - GFF3676 0.89 -0.1 178,479 - GFF3676 0.89 +1.8 178,479 - GFF3676 0.89 -0.7 178,479 - GFF3676 0.89 +0.5 178,526 + +2.2 178,526 + -0.1 178,526 + +0.4 178,526 + -1.5 178,526 + -1.6 178,526 + -1.2 178,526 + -1.7 178,527 - -1.2 178,527 - +0.2 178,527 - +0.8 178,527 - -0.3 178,527 - -0.9 178,527 - -2.1 178,527 - -3.7 178,527 - -0.0 178,527 - +2.2 178,527 - +1.7 178,529 + -2.0 178,529 + -0.6 178,705 + GFF3677 0.32 -1.0 178,706 - GFF3677 0.33 +0.1 178,706 - GFF3677 0.33 +1.4 178,943 + -0.6 178,943 + -0.7 178,943 + +0.3 178,943 + -0.0 178,943 + -0.2 178,943 + -1.1 178,943 + -0.9 178,944 - -2.2 178,944 - +1.0 178,944 - +0.3 178,944 - -1.1 178,944 - -0.4 178,944 - -2.3 178,959 + +0.8 178,960 - -1.7 178,960 - -1.7 178,960 - -0.6 178,968 + -1.7 178,968 + -0.4 178,968 + +0.4 178,968 + -0.4 178,968 + +0.6 178,969 - -0.2 178,969 - -0.4 178,969 - -0.0 178,980 + -0.3 178,980 + +0.7 178,980 + +0.7 178,980 + +0.4 178,980 + -0.4 178,980 + +2.4 178,980 + -1.2 178,980 + +1.2 178,980 + +0.5 178,980 + -0.7 178,980 + +0.1 178,980 + -1.7 178,980 + -2.0 178,980 + -1.9 178,980 + -1.5 178,980 + -2.3 178,980 + -2.3 178,981 - -0.9 178,981 - +2.0 178,981 - -0.5 178,981 - -0.9 178,981 - +0.8 178,981 - +1.3 178,981 - -0.4 178,981 - +1.4 179,008 + GFF3678 0.11 +1.8 179,008 + GFF3678 0.11 -0.0 179,008 + GFF3678 0.11 -0.4 179,009 - GFF3678 0.11 +1.3 179,043 + GFF3678 0.15 +0.3 179,511 + GFF3678 0.67 -0.3 179,511 + GFF3678 0.67 -1.3 179,511 + GFF3678 0.67 -1.5 179,512 - GFF3678 0.67 +0.4 179,512 - GFF3678 0.67 +0.8 179,512 - GFF3678 0.67 +0.8
Or see this region's nucleotide sequence