Strain Fitness in Variovorax sp. SCN45 around GFF3614

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
127,045	-		GFF3612	0.66	-0.9
127,045	-		GFF3612	0.66	+0.3
127,092	+		GFF3612	0.70	+0.4
127,092	+		GFF3612	0.70	+0.5
127,092	+		GFF3612	0.70	+0.3
127,092	+		GFF3612	0.70	+0.7
127,093	-		GFF3612	0.71	+0.3
127,093	-		GFF3612	0.71	-1.7
127,093	-		GFF3612	0.71	-1.2
127,093	-		GFF3612	0.71	-0.7
127,093	-		GFF3612	0.71	-1.2
127,093	-		GFF3612	0.71	-2.1
127,093	-		GFF3612	0.71	-1.1
127,120	-		GFF3612	0.73	-2.1
127,120	-		GFF3612	0.73	-0.2
127,164	+		GFF3612	0.77	+0.2
127,164	+		GFF3612	0.77	-1.7
127,164	+		GFF3612	0.77	+1.2
127,164	+		GFF3612	0.77	+1.3
127,164	+		GFF3612	0.77	-1.3
127,164	+		GFF3612	0.77	-1.3
127,164	+		GFF3612	0.77	-1.0
127,165	-		GFF3612	0.77	-0.0
127,165	-		GFF3612	0.77	+0.5
127,165	-		GFF3612	0.77	-2.2
127,207	-		GFF3612	0.80	-1.5
127,212	+		GFF3612	0.81	-0.2
127,213	-		GFF3612	0.81	-0.2
127,341	+				-1.3
127,341	+				-0.2
127,341	+				-0.9
127,341	+				+1.0
127,342	-				+0.6
127,342	-				+0.8
127,342	-				-1.5
127,342	-				-0.5
127,422	+				-0.2
127,422	+				+0.8
127,422	+				-0.2
127,423	-				-0.4
127,423	-				-1.2
127,423	-				-0.9
127,423	-				+0.2
127,423	-				+0.8
127,558	+		GFF3613	0.24	+0.8
127,558	+		GFF3613	0.24	-0.9
127,558	+		GFF3613	0.24	-0.2
127,558	+		GFF3613	0.24	-0.3
127,558	+		GFF3613	0.24	-2.7
127,559	-		GFF3613	0.24	+1.7
127,559	-		GFF3613	0.24	-0.9
127,615	+		GFF3613	0.36	+0.3
127,616	-		GFF3613	0.36	-3.3
127,616	-		GFF3613	0.36	+0.4
127,616	-		GFF3613	0.36	-0.3
127,616	-		GFF3613	0.36	+1.4
127,616	-		GFF3613	0.36	-0.7
127,616	-		GFF3613	0.36	-1.3
127,711	+		GFF3613	0.56	-1.4
127,712	-		GFF3613	0.57	+0.7
127,712	-		GFF3613	0.57	-0.6
127,714	+		GFF3613	0.57	-0.4
127,714	+		GFF3613	0.57	+0.4
127,714	+		GFF3613	0.57	+0.1
127,715	-		GFF3613	0.57	+1.4
127,715	-		GFF3613	0.57	+0.8
127,715	-		GFF3613	0.57	+0.3
127,945	-				-1.2
128,114	-		GFF3614	0.29	+0.8
128,161	+		GFF3614	0.36	+0.1
128,479	+		GFF3614	0.85	-0.9
128,479	+		GFF3614	0.85	+0.0
128,479	+		GFF3614	0.85	+1.2
128,480	-		GFF3614	0.85	-1.5
128,480	-		GFF3614	0.85	-0.8
128,480	-		GFF3614	0.85	-0.6
128,492	-		GFF3614	0.87	-0.9
128,492	-		GFF3614	0.87	-0.3
128,623	+				-2.5
128,623	+				-1.2
128,623	+				+2.4
128,623	+				+0.3
128,624	-				-1.2
128,624	-				-0.3
128,624	-				-1.3
128,624	-				+1.0
128,624	-				-0.7
128,624	-				+1.1
128,861	-		GFF3615	0.37	+0.5
128,869	+		GFF3615	0.38	+0.1
128,869	+		GFF3615	0.38	-3.8
128,869	+		GFF3615	0.38	-0.6
128,869	+		GFF3615	0.38	-1.2
128,869	+		GFF3615	0.38	+1.4
128,869	+		GFF3615	0.38	+0.9
128,869	+		GFF3615	0.38	-0.2
128,870	-		GFF3615	0.38	-0.7
128,870	-		GFF3615	0.38	-1.5
128,870	-		GFF3615	0.38	-2.6
128,870	-		GFF3615	0.38	+0.8
128,870	-		GFF3615	0.38	-0.6
129,232	+		GFF3615	0.87	-0.5
129,232	+		GFF3615	0.87	+0.0
129,232	+		GFF3615	0.87	-2.6
129,232	+		GFF3615	0.87	-0.0
129,233	-		GFF3615	0.87	+0.2
129,334	+				-0.2
129,334	+				-1.8
129,334	+				+1.1
129,335	-				+0.5
129,335	-				+0.4
129,335	-				-2.3
129,335	-				-1.5
129,335	-				-1.8
129,364	-				-0.2
129,380	+				-0.1
129,380	+				-1.7
129,380	+				-1.4
129,380	+				+0.4
129,380	+				+0.0
129,380	+				+0.7
129,380	+				+0.7
129,380	+				+1.0
129,380	+				-2.0
129,380	+				-1.1
129,381	-				+0.1
129,381	-				+0.3
129,381	-				-0.6
129,381	-				-0.6
129,381	-				+2.4
129,381	-				+1.5
129,381	-				+1.5
129,425	+				-0.6
129,425	+				-0.7
129,425	+				+0.3
129,428	+				-1.8
129,428	+				-1.7
129,428	+				-1.2
129,428	+				+0.8
129,428	+				-1.1
129,429	-				-0.3
129,429	-				-1.1
129,429	-				-1.5
129,429	-				-1.3
129,429	-				-1.6
129,455	+				-0.7
129,455	+				-0.0
129,455	+				-1.4
129,455	+				-1.1
129,455	+				-0.7
129,455	+				-0.0
129,456	-				-2.4
129,456	-				+0.4
129,456	-				+0.1
129,456	-				+2.4
129,456	-				-1.4
129,456	-				+2.7
129,456	-				-2.1
129,456	-				-2.0
129,520	+		GFF3616	0.20	-1.7