Strain Fitness in Variovorax sp. SCN45 around GFF3192

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
7,708	+				+0.4
7,709	-				+1.2
7,927	+				-2.6
7,927	+				-0.9
7,928	-				-1.7
7,928	-				+0.7
7,943	+				+1.4
7,943	+				-0.3
7,944	-				-1.6
7,944	-				-0.8
7,944	-				-0.5
8,111	+		GFF3191	0.25	+0.6
8,112	-		GFF3191	0.25	+0.6
8,144	+		GFF3191	0.29	-1.3
8,144	+		GFF3191	0.29	+0.3
8,251	-		GFF3191	0.44	+0.4
8,251	-		GFF3191	0.44	-0.8
8,251	-		GFF3191	0.44	+2.5
8,251	-		GFF3191	0.44	+0.2
8,339	+		GFF3191	0.56	-0.9
8,367	+		GFF3191	0.60	+0.0
8,367	+		GFF3191	0.60	-1.3
8,368	-		GFF3191	0.60	-2.2
8,368	-		GFF3191	0.60	-0.3
8,368	-		GFF3191	0.60	+0.8
8,408	+		GFF3191	0.66	-0.9
8,469	+		GFF3191	0.74	+2.3
8,469	+		GFF3191	0.74	+0.1
8,470	-		GFF3191	0.74	-0.8
8,470	-		GFF3191	0.74	+0.9
8,471	+		GFF3191	0.74	+0.5
8,471	+		GFF3191	0.74	+0.2
8,471	+		GFF3191	0.74	-0.0
8,471	+		GFF3191	0.74	+0.5
8,471	+		GFF3191	0.74	+0.6
8,472	-		GFF3191	0.74	+0.2
8,472	-		GFF3191	0.74	-0.1
8,472	-		GFF3191	0.74	+1.7
8,676	-				-0.1
8,676	-				-1.7
8,685	+				+2.5
8,685	+				-2.3
8,686	-				-0.8
8,686	-				-1.3
8,763	+				+0.8
8,764	-				+0.9
8,771	+				-1.4
8,772	-				-0.1
8,863	+		GFF3192	0.16	-2.1
8,881	+		GFF3192	0.18	+1.1
8,882	-		GFF3192	0.18	-0.3
9,037	+		GFF3192	0.30	-0.4
9,037	+		GFF3192	0.30	-0.2
9,038	-		GFF3192	0.30	-1.1
9,038	-		GFF3192	0.30	+1.0
9,038	-		GFF3192	0.30	+2.7
9,108	+		GFF3192	0.35	+0.7
9,108	+		GFF3192	0.35	-1.3
9,328	+		GFF3192	0.53	-3.5
9,328	+		GFF3192	0.53	-2.0
9,339	+		GFF3192	0.54	-2.1
9,339	+		GFF3192	0.54	+0.2
9,340	-		GFF3192	0.54	+0.2
9,410	+		GFF3192	0.59	-0.7
9,410	+		GFF3192	0.59	+1.0
9,410	+		GFF3192	0.59	+0.6
9,411	-		GFF3192	0.59	+0.2
9,477	+		GFF3192	0.64	-0.4
9,478	-		GFF3192	0.64	-0.6
9,478	-		GFF3192	0.64	-0.3
9,478	-		GFF3192	0.64	+0.6
9,551	+		GFF3192	0.70	-2.5
9,579	+		GFF3192	0.72	-0.5
9,579	+		GFF3192	0.72	+1.5
9,579	+		GFF3192	0.72	-0.3
9,580	-		GFF3192	0.72	-1.1
9,580	-		GFF3192	0.72	-1.2
9,580	-		GFF3192	0.72	-1.2
9,580	-		GFF3192	0.72	-1.8
9,608	+		GFF3192	0.75	-0.3
9,608	+		GFF3192	0.75	-1.9
9,667	+		GFF3192	0.79	-0.5
9,692	-		GFF3192	0.81	-1.2
9,692	-		GFF3192	0.81	-1.5
9,780	+		GFF3192	0.88	-0.1
9,817	+				+0.9
9,817	+				-1.4
9,817	+				+1.3
9,817	+				-0.2
9,817	+				+0.9
9,817	+				-0.3
9,818	-				-1.5
9,818	-				-0.6
9,818	-				+0.3
9,818	-				+0.6
9,818	-				-0.3
9,818	-				+0.9
9,821	+				-1.0
9,821	+				-1.2
9,821	+				-0.5
9,821	+				-2.2
9,822	-				+1.0
9,822	-				-0.8
9,822	-				-0.0
9,822	-				+0.5
9,822	-				+0.1
9,822	-				-1.0
9,904	-				+0.8
9,904	-				-0.9
9,979	+				-3.3
9,980	-				-1.0
9,980	-				-1.7
10,054	+		GFF3193	0.10	-0.1
10,054	+		GFF3193	0.10	-2.4
10,054	+		GFF3193	0.10	+0.1
10,054	+		GFF3193	0.10	+0.4
10,075	+		GFF3193	0.13	+0.5
10,076	-		GFF3193	0.13	-0.7
10,141	+		GFF3193	0.22	-0.9
10,141	+		GFF3193	0.22	-1.1
10,142	-		GFF3193	0.22	-0.4
10,142	-		GFF3193	0.22	-1.2
10,142	-		GFF3193	0.22	-0.7
10,142	-		GFF3193	0.22	-0.6
10,163	+		GFF3193	0.25	-0.9
10,202	-		GFF3193	0.30	+2.0
10,246	+		GFF3193	0.36	-0.7
10,383	+		GFF3193	0.54	-0.1
10,383	+		GFF3193	0.54	+0.1
10,384	-		GFF3193	0.54	-0.3
10,415	-		GFF3193	0.59	-1.4
10,437	-		GFF3193	0.61	-0.9
10,437	-		GFF3193	0.61	-0.3
10,462	+		GFF3193	0.65	-2.5
10,463	-		GFF3193	0.65	-2.3
10,538	-		GFF3193	0.75	-0.5
10,538	-		GFF3193	0.75	+0.7
10,541	+		GFF3193	0.75	+0.2
10,541	+		GFF3193	0.75	+0.9
10,541	+		GFF3193	0.75	-2.9
10,542	-		GFF3193	0.76	-1.1
10,542	-		GFF3193	0.76	-2.1
10,542	-		GFF3193	0.76	-0.9
10,641	+		GFF3193	0.89	-1.9
10,641	+		GFF3193	0.89	+0.7
10,642	-		GFF3193	0.89	-1.2
10,642	-		GFF3193	0.89	-2.0
10,663	+				-1.1
10,669	+				-1.3
10,669	+				+3.4
10,669	+				+1.4
10,670	-				-0.7
10,746	+				+0.5
10,746	+				+0.9
10,746	+				-0.3
10,928	+				-0.8
10,929	-				-0.6