Strain Fitness in Variovorax sp. SCN45 around GFF3176

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3175 and GFF3176 are separated by 18 nucleotidesGFF3176 and GFF3177 are separated by 162 nucleotidesGFF3177 and GFF3178 are separated by 289 nucleotides GFF3175 - Uncharacterized MFS-type transporter, at 615,966 to 617,279 GFF3175 GFF3176 - Two-component transcriptional response regulator, LuxR family, at 617,298 to 617,771 GFF3176 GFF3177 - hypothetical protein, at 617,934 to 618,158 GFF3177 GFF3178 - hypothetical protein, at 618,448 to 621,555 GFF3178 Position (kb) 617 618Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 616.383 kb on + strand, within GFF3175at 616.416 kb on + strand, within GFF3175at 616.416 kb on + strand, within GFF3175at 616.416 kb on + strand, within GFF3175at 616.416 kb on + strand, within GFF3175at 616.416 kb on + strand, within GFF3175at 616.572 kb on + strand, within GFF3175at 616.572 kb on + strand, within GFF3175at 616.572 kb on + strand, within GFF3175at 616.572 kb on + strand, within GFF3175at 616.572 kb on + strand, within GFF3175at 616.572 kb on + strand, within GFF3175at 616.572 kb on + strand, within GFF3175at 616.572 kb on + strand, within GFF3175at 616.573 kb on - strand, within GFF3175at 616.573 kb on - strand, within GFF3175at 616.573 kb on - strand, within GFF3175at 616.573 kb on - strand, within GFF3175at 616.573 kb on - strand, within GFF3175at 616.752 kb on + strand, within GFF3175at 616.752 kb on + strand, within GFF3175at 616.753 kb on - strand, within GFF3175at 616.881 kb on + strand, within GFF3175at 616.881 kb on + strand, within GFF3175at 616.881 kb on + strand, within GFF3175at 616.881 kb on + strand, within GFF3175at 616.881 kb on + strand, within GFF3175at 616.881 kb on + strand, within GFF3175at 616.881 kb on + strand, within GFF3175at 616.881 kb on + strand, within GFF3175at 616.882 kb on - strand, within GFF3175at 616.882 kb on - strand, within GFF3175at 616.882 kb on - strand, within GFF3175at 616.882 kb on - strand, within GFF3175at 616.882 kb on - strand, within GFF3175at 616.882 kb on - strand, within GFF3175at 616.882 kb on - strand, within GFF3175at 617.001 kb on + strand, within GFF3175at 617.001 kb on + strand, within GFF3175at 617.002 kb on - strand, within GFF3175at 617.002 kb on - strand, within GFF3175at 617.086 kb on - strand, within GFF3175at 617.181 kb on + strandat 617.181 kb on + strandat 617.181 kb on + strandat 617.181 kb on + strandat 617.181 kb on + strandat 617.181 kb on + strandat 617.181 kb on + strandat 617.181 kb on + strandat 617.181 kb on + strandat 617.182 kb on - strandat 617.182 kb on - strandat 617.182 kb on - strandat 617.182 kb on - strandat 617.182 kb on - strandat 617.285 kb on + strandat 617.285 kb on + strandat 617.368 kb on + strand, within GFF3176at 617.368 kb on + strand, within GFF3176at 617.368 kb on + strand, within GFF3176at 617.368 kb on + strand, within GFF3176at 617.368 kb on + strand, within GFF3176at 617.368 kb on + strand, within GFF3176at 617.369 kb on - strand, within GFF3176at 617.369 kb on - strand, within GFF3176at 617.369 kb on - strand, within GFF3176at 617.369 kb on - strand, within GFF3176at 617.369 kb on - strand, within GFF3176at 617.369 kb on - strand, within GFF3176at 617.406 kb on + strand, within GFF3176at 617.406 kb on + strand, within GFF3176at 617.587 kb on + strand, within GFF3176at 617.588 kb on - strand, within GFF3176at 617.588 kb on - strand, within GFF3176at 617.794 kb on + strandat 617.809 kb on - strandat 617.869 kb on + strandat 617.870 kb on - strandat 617.870 kb on - strandat 617.870 kb on - strandat 617.870 kb on - strandat 617.946 kb on + strandat 617.946 kb on + strandat 617.946 kb on + strandat 617.947 kb on - strandat 618.113 kb on + strand, within GFF3177at 618.178 kb on + strandat 618.179 kb on - strandat 618.207 kb on + strandat 618.208 kb on - strandat 618.208 kb on - strandat 618.208 kb on - strandat 618.261 kb on + strandat 618.262 kb on - strandat 618.285 kb on + strandat 618.300 kb on + strandat 618.316 kb on + strandat 618.329 kb on + strandat 618.335 kb on + strandat 618.335 kb on + strandat 618.335 kb on + strandat 618.405 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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616,383 + GFF3175 0.32 +0.4
616,416 + GFF3175 0.34 -1.0
616,416 + GFF3175 0.34 -0.2
616,416 + GFF3175 0.34 -1.4
616,416 + GFF3175 0.34 +0.3
616,416 + GFF3175 0.34 -1.1
616,572 + GFF3175 0.46 +0.2
616,572 + GFF3175 0.46 -0.9
616,572 + GFF3175 0.46 +1.5
616,572 + GFF3175 0.46 +1.2
616,572 + GFF3175 0.46 -0.4
616,572 + GFF3175 0.46 -1.9
616,572 + GFF3175 0.46 +0.4
616,572 + GFF3175 0.46 -0.7
616,573 - GFF3175 0.46 -0.6
616,573 - GFF3175 0.46 +1.3
616,573 - GFF3175 0.46 -1.3
616,573 - GFF3175 0.46 -0.2
616,573 - GFF3175 0.46 -1.2
616,752 + GFF3175 0.60 -0.4
616,752 + GFF3175 0.60 -1.0
616,753 - GFF3175 0.60 +0.1
616,881 + GFF3175 0.70 -2.4
616,881 + GFF3175 0.70 +0.4
616,881 + GFF3175 0.70 +0.7
616,881 + GFF3175 0.70 +0.4
616,881 + GFF3175 0.70 -1.4
616,881 + GFF3175 0.70 -0.5
616,881 + GFF3175 0.70 -0.1
616,881 + GFF3175 0.70 -0.5
616,882 - GFF3175 0.70 -2.8
616,882 - GFF3175 0.70 -0.6
616,882 - GFF3175 0.70 +1.0
616,882 - GFF3175 0.70 +0.7
616,882 - GFF3175 0.70 -0.1
616,882 - GFF3175 0.70 -2.8
616,882 - GFF3175 0.70 -0.3
617,001 + GFF3175 0.79 -0.6
617,001 + GFF3175 0.79 -0.1
617,002 - GFF3175 0.79 +0.9
617,002 - GFF3175 0.79 -1.1
617,086 - GFF3175 0.85 +0.0
617,181 + +0.4
617,181 + -1.1
617,181 + -0.9
617,181 + -0.4
617,181 + +1.5
617,181 + +0.6
617,181 + -0.3
617,181 + -1.7
617,181 + -2.8
617,182 - -0.2
617,182 - -0.3
617,182 - -2.4
617,182 - -0.2
617,182 - -0.6
617,285 + -2.4
617,285 + +1.4
617,368 + GFF3176 0.15 -2.3
617,368 + GFF3176 0.15 -0.8
617,368 + GFF3176 0.15 -1.2
617,368 + GFF3176 0.15 +0.8
617,368 + GFF3176 0.15 +2.0
617,368 + GFF3176 0.15 +0.1
617,369 - GFF3176 0.15 -0.3
617,369 - GFF3176 0.15 +0.7
617,369 - GFF3176 0.15 -1.0
617,369 - GFF3176 0.15 -2.1
617,369 - GFF3176 0.15 -0.6
617,369 - GFF3176 0.15 -0.2
617,406 + GFF3176 0.23 -0.3
617,406 + GFF3176 0.23 -0.5
617,587 + GFF3176 0.61 -3.8
617,588 - GFF3176 0.61 -1.6
617,588 - GFF3176 0.61 +1.4
617,794 + +3.6
617,809 - -2.5
617,869 + -0.5
617,870 - +1.0
617,870 - -0.4
617,870 - -1.8
617,870 - -0.9
617,946 + +0.4
617,946 + -0.3
617,946 + +1.0
617,947 - -0.0
618,113 + GFF3177 0.80 -1.0
618,178 + +1.8
618,179 - -0.8
618,207 + -0.9
618,208 - -1.3
618,208 - -1.2
618,208 - -2.4
618,261 + +1.3
618,262 - +1.3
618,285 + +3.0
618,300 + -0.9
618,316 + -0.3
618,329 + +3.0
618,335 + +1.5
618,335 + +4.6
618,335 + +0.0
618,405 + +2.4

Or see this region's nucleotide sequence