Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3161 and GFF3162 are separated by 7 nucleotides GFF3162 and GFF3163 are separated by 161 nucleotides
GFF3161 - Acetate kinase (EC 2.7.2.1), at 599,094 to 600,299
GFF3161
GFF3162 - Sulfoacetaldehyde acetyltransferase (EC 2.3.3.15), at 600,307 to 602,130
GFF3162
GFF3163 - Transcriptional regulator, IclR family, at 602,292 to 603,125
GFF3163
Position (kb) 600
601
602
603 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 599.525 kb on - strand, within GFF3161 at 600.314 kb on + strand at 600.315 kb on - strand at 600.315 kb on - strand at 600.323 kb on + strand at 600.323 kb on + strand at 600.323 kb on + strand at 600.566 kb on + strand, within GFF3162 at 600.699 kb on - strand, within GFF3162 at 600.818 kb on + strand, within GFF3162 at 600.818 kb on + strand, within GFF3162 at 600.818 kb on + strand, within GFF3162 at 600.818 kb on + strand, within GFF3162 at 600.819 kb on - strand, within GFF3162 at 600.819 kb on - strand, within GFF3162 at 600.920 kb on + strand, within GFF3162 at 600.920 kb on + strand, within GFF3162 at 600.921 kb on - strand, within GFF3162 at 601.329 kb on - strand, within GFF3162 at 601.589 kb on + strand, within GFF3162 at 601.595 kb on + strand, within GFF3162 at 601.608 kb on + strand, within GFF3162 at 601.665 kb on - strand, within GFF3162 at 601.703 kb on + strand, within GFF3162 at 601.703 kb on + strand, within GFF3162 at 601.703 kb on + strand, within GFF3162 at 601.817 kb on + strand, within GFF3162 at 601.904 kb on + strand, within GFF3162 at 601.905 kb on - strand, within GFF3162 at 601.979 kb on + strand at 602.216 kb on + strand at 602.217 kb on - strand at 602.218 kb on + strand at 602.218 kb on + strand at 602.218 kb on + strand at 602.218 kb on + strand at 602.218 kb on + strand at 602.218 kb on + strand at 602.219 kb on - strand at 602.219 kb on - strand at 602.219 kb on - strand at 602.219 kb on - strand at 602.219 kb on - strand at 602.219 kb on - strand at 602.219 kb on - strand at 602.219 kb on - strand at 602.291 kb on + strand at 602.526 kb on + strand, within GFF3163 at 602.676 kb on + strand, within GFF3163 at 602.676 kb on + strand, within GFF3163 at 602.716 kb on - strand, within GFF3163 at 602.832 kb on + strand, within GFF3163 at 602.833 kb on - strand, within GFF3163 at 602.833 kb on - strand, within GFF3163
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 599,525 - GFF3161 0.36 -1.1 600,314 + -0.1 600,315 - -3.8 600,315 - -0.8 600,323 + -2.0 600,323 + -1.1 600,323 + +0.2 600,566 + GFF3162 0.14 +0.8 600,699 - GFF3162 0.21 -4.1 600,818 + GFF3162 0.28 -1.7 600,818 + GFF3162 0.28 -2.1 600,818 + GFF3162 0.28 -1.6 600,818 + GFF3162 0.28 +0.2 600,819 - GFF3162 0.28 -1.6 600,819 - GFF3162 0.28 +0.0 600,920 + GFF3162 0.34 -3.1 600,920 + GFF3162 0.34 -0.6 600,921 - GFF3162 0.34 -0.4 601,329 - GFF3162 0.56 -0.8 601,589 + GFF3162 0.70 -1.5 601,595 + GFF3162 0.71 -0.3 601,608 + GFF3162 0.71 -0.6 601,665 - GFF3162 0.74 -1.0 601,703 + GFF3162 0.77 -1.4 601,703 + GFF3162 0.77 -3.1 601,703 + GFF3162 0.77 +1.1 601,817 + GFF3162 0.83 +2.8 601,904 + GFF3162 0.88 -1.3 601,905 - GFF3162 0.88 -0.3 601,979 + +0.0 602,216 + -1.3 602,217 - -1.4 602,218 + -0.3 602,218 + -0.8 602,218 + -2.9 602,218 + -1.0 602,218 + +0.4 602,218 + -1.7 602,219 - -1.9 602,219 - -0.8 602,219 - -2.3 602,219 - -0.5 602,219 - -0.1 602,219 - -0.6 602,219 - -3.0 602,219 - +1.1 602,291 + -0.5 602,526 + GFF3163 0.28 -2.1 602,676 + GFF3163 0.46 +0.2 602,676 + GFF3163 0.46 -1.9 602,716 - GFF3163 0.51 -0.6 602,832 + GFF3163 0.65 +1.9 602,833 - GFF3163 0.65 -1.8 602,833 - GFF3163 0.65 +0.8
Or see this region's nucleotide sequence