Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3032 and GFF3033 are separated by 62 nucleotides GFF3033 and GFF3034 are separated by 74 nucleotides GFF3034 and GFF3035 are separated by 96 nucleotides
GFF3032 - Two-component transcriptional response regulator, LuxR family, at 464,314 to 465,069
GFF3032
GFF3033 - hypothetical protein, at 465,132 to 466,934
GFF3033
GFF3034 - no description, at 467,009 to 467,281
GFF3034
GFF3035 - Ferrichrome-iron receptor, at 467,378 to 469,573
GFF3035
Position (kb) 465
466
467 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 464.168 kb on + strand at 464.168 kb on + strand at 464.169 kb on - strand at 464.190 kb on + strand at 464.190 kb on + strand at 464.191 kb on - strand at 464.191 kb on - strand at 464.616 kb on - strand, within GFF3032 at 464.689 kb on + strand, within GFF3032 at 464.689 kb on + strand, within GFF3032 at 464.689 kb on + strand, within GFF3032 at 464.741 kb on + strand, within GFF3032 at 464.741 kb on + strand, within GFF3032 at 464.742 kb on - strand, within GFF3032 at 464.742 kb on - strand, within GFF3032 at 464.742 kb on - strand, within GFF3032 at 464.742 kb on - strand, within GFF3032 at 464.742 kb on - strand, within GFF3032 at 465.259 kb on - strand at 465.339 kb on + strand, within GFF3033 at 465.339 kb on + strand, within GFF3033 at 465.339 kb on + strand, within GFF3033 at 465.339 kb on + strand, within GFF3033 at 465.340 kb on - strand, within GFF3033 at 465.340 kb on - strand, within GFF3033 at 465.513 kb on + strand, within GFF3033 at 465.825 kb on + strand, within GFF3033 at 465.825 kb on + strand, within GFF3033 at 465.825 kb on + strand, within GFF3033 at 465.825 kb on + strand, within GFF3033 at 465.826 kb on - strand, within GFF3033 at 465.826 kb on - strand, within GFF3033 at 465.936 kb on + strand, within GFF3033 at 465.937 kb on - strand, within GFF3033 at 465.969 kb on + strand, within GFF3033 at 465.969 kb on + strand, within GFF3033 at 465.969 kb on + strand, within GFF3033 at 465.969 kb on + strand, within GFF3033 at 466.058 kb on - strand, within GFF3033 at 466.431 kb on + strand, within GFF3033 at 466.431 kb on + strand, within GFF3033 at 466.431 kb on + strand, within GFF3033 at 467.033 kb on + strand at 467.034 kb on - strand at 467.034 kb on - strand at 467.034 kb on - strand at 467.034 kb on - strand at 467.229 kb on - strand, within GFF3034 at 467.789 kb on + strand, within GFF3035 at 467.789 kb on + strand, within GFF3035 at 467.789 kb on + strand, within GFF3035 at 467.789 kb on + strand, within GFF3035 at 467.789 kb on + strand, within GFF3035 at 467.789 kb on + strand, within GFF3035 at 467.789 kb on + strand, within GFF3035 at 467.790 kb on - strand, within GFF3035 at 467.790 kb on - strand, within GFF3035 at 467.790 kb on - strand, within GFF3035 at 467.790 kb on - strand, within GFF3035 at 467.790 kb on - strand, within GFF3035 at 467.790 kb on - strand, within GFF3035 at 467.790 kb on - strand, within GFF3035 at 467.862 kb on - strand, within GFF3035
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 464,168 + -1.0 464,168 + -1.8 464,169 - -1.4 464,190 + -2.8 464,190 + -0.0 464,191 - +1.9 464,191 - -1.4 464,616 - GFF3032 0.40 -0.6 464,689 + GFF3032 0.50 -1.7 464,689 + GFF3032 0.50 -2.4 464,689 + GFF3032 0.50 -1.4 464,741 + GFF3032 0.56 -2.3 464,741 + GFF3032 0.56 +2.0 464,742 - GFF3032 0.57 -3.6 464,742 - GFF3032 0.57 +1.0 464,742 - GFF3032 0.57 -0.3 464,742 - GFF3032 0.57 -1.7 464,742 - GFF3032 0.57 +0.0 465,259 - -1.0 465,339 + GFF3033 0.11 +0.9 465,339 + GFF3033 0.11 -2.3 465,339 + GFF3033 0.11 -3.4 465,339 + GFF3033 0.11 -0.8 465,340 - GFF3033 0.12 +1.8 465,340 - GFF3033 0.12 +0.4 465,513 + GFF3033 0.21 +1.5 465,825 + GFF3033 0.38 +3.8 465,825 + GFF3033 0.38 -2.9 465,825 + GFF3033 0.38 -1.7 465,825 + GFF3033 0.38 -2.7 465,826 - GFF3033 0.38 -1.2 465,826 - GFF3033 0.38 +0.4 465,936 + GFF3033 0.45 -0.3 465,937 - GFF3033 0.45 -1.3 465,969 + GFF3033 0.46 -1.4 465,969 + GFF3033 0.46 -0.8 465,969 + GFF3033 0.46 -0.2 465,969 + GFF3033 0.46 +0.0 466,058 - GFF3033 0.51 -1.7 466,431 + GFF3033 0.72 +1.1 466,431 + GFF3033 0.72 -1.7 466,431 + GFF3033 0.72 -2.1 467,033 + -1.6 467,034 - -0.7 467,034 - -2.7 467,034 - -2.1 467,034 - +0.6 467,229 - GFF3034 0.81 +0.5 467,789 + GFF3035 0.19 +0.2 467,789 + GFF3035 0.19 -0.1 467,789 + GFF3035 0.19 -1.3 467,789 + GFF3035 0.19 +0.2 467,789 + GFF3035 0.19 +0.3 467,789 + GFF3035 0.19 -0.2 467,789 + GFF3035 0.19 -1.4 467,790 - GFF3035 0.19 -0.0 467,790 - GFF3035 0.19 -0.5 467,790 - GFF3035 0.19 -0.4 467,790 - GFF3035 0.19 -0.2 467,790 - GFF3035 0.19 -4.4 467,790 - GFF3035 0.19 -2.9 467,790 - GFF3035 0.19 -1.1 467,862 - GFF3035 0.22 -1.0
Or see this region's nucleotide sequence