Strain Fitness in Variovorax sp. SCN45 around GFF2897

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2896 and GFF2897 are separated by 28 nucleotidesGFF2897 and GFF2898 are separated by 25 nucleotides GFF2896 - Methionine synthase II (cobalamin-independent), at 321,913 to 323,034 GFF2896 GFF2897 - Glutathione S-transferase-like( EC:2.5.1.18 ), at 323,063 to 323,737 GFF2897 GFF2898 - Cardiolipin synthase, bacterial type ClsA, at 323,763 to 325,145 GFF2898 Position (kb) 323 324Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 322.126 kb on + strand, within GFF2896at 322.126 kb on + strand, within GFF2896at 322.126 kb on + strand, within GFF2896at 322.126 kb on + strand, within GFF2896at 322.126 kb on + strand, within GFF2896at 322.127 kb on - strand, within GFF2896at 322.127 kb on - strand, within GFF2896at 322.127 kb on - strand, within GFF2896at 322.285 kb on + strand, within GFF2896at 322.285 kb on + strand, within GFF2896at 322.286 kb on - strand, within GFF2896at 322.415 kb on - strand, within GFF2896at 322.435 kb on + strand, within GFF2896at 322.435 kb on + strand, within GFF2896at 322.435 kb on + strand, within GFF2896at 322.435 kb on + strand, within GFF2896at 322.435 kb on + strand, within GFF2896at 322.436 kb on - strand, within GFF2896at 322.477 kb on + strand, within GFF2896at 322.477 kb on + strand, within GFF2896at 322.477 kb on + strand, within GFF2896at 322.478 kb on - strand, within GFF2896at 322.478 kb on - strand, within GFF2896at 322.478 kb on - strand, within GFF2896at 322.478 kb on - strand, within GFF2896at 322.478 kb on - strand, within GFF2896at 322.478 kb on - strand, within GFF2896at 322.478 kb on - strand, within GFF2896at 322.507 kb on + strand, within GFF2896at 322.507 kb on + strand, within GFF2896at 322.507 kb on + strand, within GFF2896at 322.507 kb on + strand, within GFF2896at 322.508 kb on - strand, within GFF2896at 322.508 kb on - strand, within GFF2896at 322.508 kb on - strand, within GFF2896at 322.508 kb on - strand, within GFF2896at 322.508 kb on - strand, within GFF2896at 322.508 kb on - strand, within GFF2896at 322.687 kb on + strand, within GFF2896at 322.687 kb on + strand, within GFF2896at 322.687 kb on + strand, within GFF2896at 322.687 kb on + strand, within GFF2896at 322.688 kb on - strand, within GFF2896at 322.688 kb on - strand, within GFF2896at 322.688 kb on - strand, within GFF2896at 322.688 kb on - strand, within GFF2896at 322.688 kb on - strand, within GFF2896at 322.688 kb on - strand, within GFF2896at 322.735 kb on + strand, within GFF2896at 322.736 kb on - strand, within GFF2896at 322.736 kb on - strand, within GFF2896at 322.736 kb on - strand, within GFF2896at 322.747 kb on + strand, within GFF2896at 322.748 kb on - strand, within GFF2896at 322.748 kb on - strand, within GFF2896at 322.891 kb on + strand, within GFF2896at 322.891 kb on + strand, within GFF2896at 322.891 kb on + strand, within GFF2896at 322.891 kb on + strand, within GFF2896at 322.892 kb on - strand, within GFF2896at 322.892 kb on - strand, within GFF2896at 322.892 kb on - strand, within GFF2896at 322.892 kb on - strand, within GFF2896at 322.892 kb on - strand, within GFF2896at 323.078 kb on + strandat 323.078 kb on + strandat 323.078 kb on + strandat 323.078 kb on + strandat 323.078 kb on + strandat 323.078 kb on + strandat 323.078 kb on + strandat 323.079 kb on - strandat 323.079 kb on - strandat 323.079 kb on - strandat 323.112 kb on + strandat 323.183 kb on + strand, within GFF2897at 323.184 kb on - strand, within GFF2897at 323.300 kb on + strand, within GFF2897at 323.301 kb on - strand, within GFF2897at 323.483 kb on + strand, within GFF2897at 323.484 kb on - strand, within GFF2897at 323.484 kb on - strand, within GFF2897at 323.486 kb on + strand, within GFF2897at 323.486 kb on + strand, within GFF2897at 323.486 kb on + strand, within GFF2897at 323.486 kb on + strand, within GFF2897at 323.486 kb on + strand, within GFF2897at 323.487 kb on - strand, within GFF2897at 323.522 kb on + strand, within GFF2897at 323.538 kb on - strand, within GFF2897at 323.561 kb on + strand, within GFF2897at 323.561 kb on + strand, within GFF2897at 323.561 kb on + strand, within GFF2897at 323.561 kb on + strand, within GFF2897at 323.562 kb on - strand, within GFF2897at 323.562 kb on - strand, within GFF2897at 323.562 kb on - strand, within GFF2897at 323.562 kb on - strand, within GFF2897at 323.562 kb on - strand, within GFF2897at 323.562 kb on - strand, within GFF2897at 323.562 kb on - strand, within GFF2897at 323.562 kb on - strand, within GFF2897at 323.562 kb on - strand, within GFF2897at 323.562 kb on - strand, within GFF2897at 323.562 kb on - strand, within GFF2897at 323.716 kb on - strandat 323.716 kb on - strandat 323.841 kb on + strandat 323.841 kb on + strandat 323.841 kb on + strandat 323.841 kb on + strandat 323.841 kb on + strandat 323.842 kb on - strandat 323.842 kb on - strandat 323.842 kb on - strandat 323.842 kb on - strandat 323.842 kb on - strandat 323.925 kb on + strand, within GFF2898at 323.925 kb on + strand, within GFF2898at 323.925 kb on + strand, within GFF2898at 323.925 kb on + strand, within GFF2898at 323.926 kb on - strand, within GFF2898at 323.926 kb on - strand, within GFF2898at 323.930 kb on - strand, within GFF2898at 323.943 kb on + strand, within GFF2898at 323.943 kb on + strand, within GFF2898at 323.943 kb on + strand, within GFF2898at 323.944 kb on - strand, within GFF2898at 323.944 kb on - strand, within GFF2898at 323.944 kb on - strand, within GFF2898at 323.944 kb on - strand, within GFF2898at 324.441 kb on + strand, within GFF2898at 324.441 kb on + strand, within GFF2898at 324.441 kb on + strand, within GFF2898at 324.724 kb on - strand, within GFF2898

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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322,126 + GFF2896 0.19 -1.3
322,126 + GFF2896 0.19 +0.0
322,126 + GFF2896 0.19 -0.6
322,126 + GFF2896 0.19 +0.4
322,126 + GFF2896 0.19 -3.2
322,127 - GFF2896 0.19 -1.0
322,127 - GFF2896 0.19 +0.1
322,127 - GFF2896 0.19 +0.2
322,285 + GFF2896 0.33 -1.6
322,285 + GFF2896 0.33 +1.0
322,286 - GFF2896 0.33 -0.2
322,415 - GFF2896 0.45 -0.8
322,435 + GFF2896 0.47 -0.0
322,435 + GFF2896 0.47 -1.1
322,435 + GFF2896 0.47 -0.5
322,435 + GFF2896 0.47 +2.8
322,435 + GFF2896 0.47 +0.9
322,436 - GFF2896 0.47 -0.9
322,477 + GFF2896 0.50 +0.8
322,477 + GFF2896 0.50 -0.8
322,477 + GFF2896 0.50 +3.0
322,478 - GFF2896 0.50 -0.5
322,478 - GFF2896 0.50 +0.9
322,478 - GFF2896 0.50 +0.6
322,478 - GFF2896 0.50 -0.5
322,478 - GFF2896 0.50 +2.1
322,478 - GFF2896 0.50 -1.5
322,478 - GFF2896 0.50 -2.0
322,507 + GFF2896 0.53 +2.0
322,507 + GFF2896 0.53 -2.4
322,507 + GFF2896 0.53 -0.8
322,507 + GFF2896 0.53 -0.2
322,508 - GFF2896 0.53 +0.5
322,508 - GFF2896 0.53 +1.0
322,508 - GFF2896 0.53 -0.3
322,508 - GFF2896 0.53 +0.0
322,508 - GFF2896 0.53 -0.1
322,508 - GFF2896 0.53 +0.5
322,687 + GFF2896 0.69 +0.0
322,687 + GFF2896 0.69 -0.4
322,687 + GFF2896 0.69 -2.7
322,687 + GFF2896 0.69 -2.7
322,688 - GFF2896 0.69 +0.5
322,688 - GFF2896 0.69 +0.4
322,688 - GFF2896 0.69 -0.4
322,688 - GFF2896 0.69 +1.3
322,688 - GFF2896 0.69 -1.1
322,688 - GFF2896 0.69 +0.1
322,735 + GFF2896 0.73 -0.6
322,736 - GFF2896 0.73 -0.8
322,736 - GFF2896 0.73 -1.0
322,736 - GFF2896 0.73 -1.6
322,747 + GFF2896 0.74 -1.0
322,748 - GFF2896 0.74 -2.8
322,748 - GFF2896 0.74 -0.5
322,891 + GFF2896 0.87 -2.0
322,891 + GFF2896 0.87 +1.0
322,891 + GFF2896 0.87 -1.3
322,891 + GFF2896 0.87 -1.4
322,892 - GFF2896 0.87 -0.6
322,892 - GFF2896 0.87 +0.9
322,892 - GFF2896 0.87 +0.2
322,892 - GFF2896 0.87 -2.4
322,892 - GFF2896 0.87 -0.3
323,078 + +1.7
323,078 + +0.0
323,078 + -1.3
323,078 + +0.5
323,078 + +0.0
323,078 + -1.9
323,078 + +2.9
323,079 - -1.1
323,079 - -0.3
323,079 - -1.6
323,112 + -0.8
323,183 + GFF2897 0.18 -2.0
323,184 - GFF2897 0.18 +2.0
323,300 + GFF2897 0.35 +2.5
323,301 - GFF2897 0.35 +0.3
323,483 + GFF2897 0.62 -1.1
323,484 - GFF2897 0.62 +0.0
323,484 - GFF2897 0.62 +0.5
323,486 + GFF2897 0.63 +0.3
323,486 + GFF2897 0.63 +0.4
323,486 + GFF2897 0.63 +2.0
323,486 + GFF2897 0.63 -1.5
323,486 + GFF2897 0.63 -0.3
323,487 - GFF2897 0.63 -1.5
323,522 + GFF2897 0.68 -2.1
323,538 - GFF2897 0.70 -1.1
323,561 + GFF2897 0.74 -0.1
323,561 + GFF2897 0.74 -2.0
323,561 + GFF2897 0.74 -0.8
323,561 + GFF2897 0.74 +0.1
323,562 - GFF2897 0.74 -0.2
323,562 - GFF2897 0.74 -3.0
323,562 - GFF2897 0.74 +1.0
323,562 - GFF2897 0.74 +0.4
323,562 - GFF2897 0.74 +0.6
323,562 - GFF2897 0.74 -1.1
323,562 - GFF2897 0.74 +0.0
323,562 - GFF2897 0.74 -0.8
323,562 - GFF2897 0.74 +1.9
323,562 - GFF2897 0.74 +1.0
323,562 - GFF2897 0.74 -2.6
323,716 - +1.0
323,716 - +0.2
323,841 + -1.4
323,841 + -1.8
323,841 + -1.1
323,841 + -1.3
323,841 + -1.0
323,842 - -1.3
323,842 - -1.8
323,842 - -0.3
323,842 - +1.2
323,842 - -1.1
323,925 + GFF2898 0.12 +0.3
323,925 + GFF2898 0.12 +0.7
323,925 + GFF2898 0.12 +0.7
323,925 + GFF2898 0.12 +2.2
323,926 - GFF2898 0.12 +0.2
323,926 - GFF2898 0.12 -0.4
323,930 - GFF2898 0.12 -1.1
323,943 + GFF2898 0.13 +0.1
323,943 + GFF2898 0.13 -1.3
323,943 + GFF2898 0.13 -1.3
323,944 - GFF2898 0.13 -0.5
323,944 - GFF2898 0.13 -0.3
323,944 - GFF2898 0.13 -0.2
323,944 - GFF2898 0.13 +3.9
324,441 + GFF2898 0.49 -0.0
324,441 + GFF2898 0.49 -1.4
324,441 + GFF2898 0.49 -2.4
324,724 - GFF2898 0.69 -0.8

Or see this region's nucleotide sequence