Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2449 and GFF2450 are separated by 20 nucleotides GFF2450 and GFF2451 are separated by 16 nucleotides
GFF2449 - Beta-ureidopropionase (EC 3.5.1.6), at 503,961 to 505,217
GFF2449
GFF2450 - Dihydropyrimidinase (EC 3.5.2.2) @ D-hydantoinase (EC 3.5.2.2), at 505,238 to 506,677
GFF2450
GFF2451 - Cytosine/purine/uracil/thiamine/allantoin permease family protein, at 506,694 to 508,199
GFF2451
Position (kb) 505
506
507 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 504.433 kb on + strand, within GFF2449 at 504.433 kb on + strand, within GFF2449 at 504.434 kb on - strand, within GFF2449 at 504.434 kb on - strand, within GFF2449 at 504.434 kb on - strand, within GFF2449 at 504.434 kb on - strand, within GFF2449 at 504.553 kb on + strand, within GFF2449 at 504.554 kb on - strand, within GFF2449 at 504.743 kb on - strand, within GFF2449 at 504.910 kb on + strand, within GFF2449 at 505.323 kb on + strand at 505.890 kb on - strand, within GFF2450 at 505.971 kb on + strand, within GFF2450 at 505.971 kb on + strand, within GFF2450 at 505.972 kb on - strand, within GFF2450 at 506.319 kb on + strand, within GFF2450 at 506.319 kb on + strand, within GFF2450 at 506.529 kb on + strand, within GFF2450 at 506.529 kb on + strand, within GFF2450 at 506.530 kb on - strand, within GFF2450 at 506.669 kb on + strand at 506.669 kb on + strand at 506.669 kb on + strand at 506.696 kb on - strand at 506.764 kb on + strand at 506.803 kb on + strand at 506.803 kb on + strand at 506.803 kb on + strand at 506.803 kb on + strand at 506.803 kb on + strand at 506.803 kb on + strand at 506.803 kb on + strand at 506.804 kb on - strand at 506.804 kb on - strand at 506.804 kb on - strand at 506.804 kb on - strand at 506.804 kb on - strand at 506.804 kb on - strand at 506.804 kb on - strand at 506.804 kb on - strand at 506.804 kb on - strand at 506.809 kb on + strand at 506.809 kb on + strand at 506.809 kb on + strand at 506.809 kb on + strand at 506.809 kb on + strand at 506.809 kb on + strand at 506.810 kb on - strand at 506.810 kb on - strand at 506.810 kb on - strand at 506.810 kb on - strand at 506.810 kb on - strand at 506.810 kb on - strand at 506.810 kb on - strand at 506.810 kb on - strand at 506.810 kb on - strand at 506.945 kb on - strand, within GFF2451 at 506.945 kb on - strand, within GFF2451 at 507.001 kb on + strand, within GFF2451 at 507.001 kb on + strand, within GFF2451 at 507.002 kb on - strand, within GFF2451 at 507.002 kb on - strand, within GFF2451 at 507.004 kb on + strand, within GFF2451 at 507.005 kb on - strand, within GFF2451 at 507.005 kb on - strand, within GFF2451 at 507.005 kb on - strand, within GFF2451 at 507.073 kb on + strand, within GFF2451 at 507.187 kb on + strand, within GFF2451 at 507.643 kb on + strand, within GFF2451 at 507.643 kb on + strand, within GFF2451 at 507.644 kb on - strand, within GFF2451
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 504,433 + GFF2449 0.38 +0.1 504,433 + GFF2449 0.38 +0.1 504,434 - GFF2449 0.38 +1.5 504,434 - GFF2449 0.38 +0.1 504,434 - GFF2449 0.38 +1.3 504,434 - GFF2449 0.38 +2.8 504,553 + GFF2449 0.47 -1.0 504,554 - GFF2449 0.47 -1.1 504,743 - GFF2449 0.62 +1.3 504,910 + GFF2449 0.75 -2.2 505,323 + +0.5 505,890 - GFF2450 0.45 -0.7 505,971 + GFF2450 0.51 -1.6 505,971 + GFF2450 0.51 -3.9 505,972 - GFF2450 0.51 -0.4 506,319 + GFF2450 0.75 -0.7 506,319 + GFF2450 0.75 +0.5 506,529 + GFF2450 0.90 -0.8 506,529 + GFF2450 0.90 -0.9 506,530 - GFF2450 0.90 -0.5 506,669 + -0.5 506,669 + +0.3 506,669 + +1.0 506,696 - +1.1 506,764 + -0.5 506,803 + -0.1 506,803 + -2.2 506,803 + -2.4 506,803 + +0.4 506,803 + +2.3 506,803 + +1.5 506,803 + +1.6 506,804 - +0.1 506,804 - +0.1 506,804 - -2.2 506,804 - -1.9 506,804 - -0.7 506,804 - +0.7 506,804 - -1.4 506,804 - -1.7 506,804 - -0.1 506,809 + +0.3 506,809 + -1.7 506,809 + +0.5 506,809 + +0.8 506,809 + -0.0 506,809 + -1.8 506,810 - -0.1 506,810 - -0.3 506,810 - -0.2 506,810 - +0.1 506,810 - +0.6 506,810 - -1.2 506,810 - -0.7 506,810 - +2.3 506,810 - -0.2 506,945 - GFF2451 0.17 -1.9 506,945 - GFF2451 0.17 -2.3 507,001 + GFF2451 0.20 +0.8 507,001 + GFF2451 0.20 -0.1 507,002 - GFF2451 0.20 -1.2 507,002 - GFF2451 0.20 +1.1 507,004 + GFF2451 0.21 +0.3 507,005 - GFF2451 0.21 -1.5 507,005 - GFF2451 0.21 -0.3 507,005 - GFF2451 0.21 -1.4 507,073 + GFF2451 0.25 -2.3 507,187 + GFF2451 0.33 -0.1 507,643 + GFF2451 0.63 -1.4 507,643 + GFF2451 0.63 +1.8 507,644 - GFF2451 0.63 -1.7
Or see this region's nucleotide sequence