Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2419 and GFF2420 are separated by 23 nucleotides GFF2420 and GFF2421 are separated by 13 nucleotides GFF2421 and GFF2422 overlap by 4 nucleotides GFF2422 and GFF2423 are separated by 36 nucleotides
GFF2419 - putative amidase, at 470,467 to 471,843
GFF2419
GFF2420 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 471,867 to 472,622
GFF2420
GFF2421 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 472,636 to 473,397
GFF2421
GFF2422 - Polysaccharide deacetylase, at 473,394 to 474,218
GFF2422
GFF2423 - Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1), at 474,255 to 475,046
GFF2423
Position (kb) 472
473
474 Strain fitness (log2 ratio) -2
-1
0
1
2 at 471.859 kb on + strand at 471.859 kb on + strand at 472.275 kb on + strand, within GFF2420 at 472.685 kb on + strand at 472.685 kb on + strand at 472.709 kb on + strand at 472.709 kb on + strand at 472.710 kb on - strand at 472.811 kb on + strand, within GFF2421 at 473.379 kb on + strand at 473.379 kb on + strand at 473.657 kb on - strand, within GFF2422 at 473.741 kb on - strand, within GFF2422 at 473.773 kb on + strand, within GFF2422 at 473.773 kb on + strand, within GFF2422 at 473.785 kb on + strand, within GFF2422 at 473.785 kb on + strand, within GFF2422 at 473.786 kb on - strand, within GFF2422 at 473.944 kb on + strand, within GFF2422 at 473.945 kb on - strand, within GFF2422
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 471,859 + +0.5 471,859 + -2.4 472,275 + GFF2420 0.54 -0.5 472,685 + -0.9 472,685 + -0.5 472,709 + -2.1 472,709 + +0.5 472,710 - -0.1 472,811 + GFF2421 0.23 +1.1 473,379 + -0.1 473,379 + -2.6 473,657 - GFF2422 0.32 -1.5 473,741 - GFF2422 0.42 -1.5 473,773 + GFF2422 0.46 +0.3 473,773 + GFF2422 0.46 -1.7 473,785 + GFF2422 0.47 -1.3 473,785 + GFF2422 0.47 -0.9 473,786 - GFF2422 0.48 +2.3 473,944 + GFF2422 0.67 -1.2 473,945 - GFF2422 0.67 -2.3
Or see this region's nucleotide sequence