Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2368 and GFF2369 are separated by 23 nucleotides GFF2369 and GFF2370 are separated by 3 nucleotides GFF2370 and GFF2371 are separated by 14 nucleotides
GFF2368 - ABC transporter, substrate-binding protein (cluster 7, di-/tri-carboxylate), at 422,349 to 423,314
GFF2368
GFF2369 - putative 2-pyrone-4,6-dicarboxylic acid hydrolase, at 423,338 to 424,213
GFF2369
GFF2370 - L-carnitine dehydratase/bile acid-inducible protein F, at 424,217 to 425,422
GFF2370
GFF2371 - BUG/TctC family periplasmic protein, at 425,437 to 426,432
GFF2371
Position (kb) 424
425
426 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 423.546 kb on + strand, within GFF2369 at 423.546 kb on + strand, within GFF2369 at 423.579 kb on + strand, within GFF2369 at 423.844 kb on - strand, within GFF2369 at 424.033 kb on + strand, within GFF2369 at 424.054 kb on - strand, within GFF2369 at 424.120 kb on - strand, within GFF2369 at 424.120 kb on - strand, within GFF2369 at 424.638 kb on + strand, within GFF2370 at 424.638 kb on + strand, within GFF2370 at 424.638 kb on + strand, within GFF2370 at 424.639 kb on - strand, within GFF2370 at 424.639 kb on - strand, within GFF2370 at 424.639 kb on - strand, within GFF2370 at 424.639 kb on - strand, within GFF2370 at 424.639 kb on - strand, within GFF2370 at 424.639 kb on - strand, within GFF2370 at 424.639 kb on - strand, within GFF2370 at 424.639 kb on - strand, within GFF2370 at 424.783 kb on - strand, within GFF2370 at 424.783 kb on - strand, within GFF2370 at 424.783 kb on - strand, within GFF2370 at 424.812 kb on + strand, within GFF2370 at 424.854 kb on + strand, within GFF2370 at 424.876 kb on - strand, within GFF2370 at 424.987 kb on - strand, within GFF2370 at 424.987 kb on - strand, within GFF2370 at 425.005 kb on - strand, within GFF2370 at 425.005 kb on - strand, within GFF2370 at 425.005 kb on - strand, within GFF2370 at 425.005 kb on - strand, within GFF2370 at 425.220 kb on + strand, within GFF2370 at 425.220 kb on + strand, within GFF2370 at 425.221 kb on - strand, within GFF2370 at 425.298 kb on + strand, within GFF2370 at 425.855 kb on + strand, within GFF2371 at 425.855 kb on + strand, within GFF2371 at 425.855 kb on + strand, within GFF2371 at 425.855 kb on + strand, within GFF2371 at 425.856 kb on - strand, within GFF2371 at 425.945 kb on + strand, within GFF2371 at 425.945 kb on + strand, within GFF2371 at 425.945 kb on + strand, within GFF2371 at 425.945 kb on + strand, within GFF2371 at 425.945 kb on + strand, within GFF2371 at 425.945 kb on + strand, within GFF2371 at 425.945 kb on + strand, within GFF2371 at 425.946 kb on - strand, within GFF2371 at 425.946 kb on - strand, within GFF2371 at 425.946 kb on - strand, within GFF2371 at 425.951 kb on + strand, within GFF2371 at 425.952 kb on - strand, within GFF2371 at 425.952 kb on - strand, within GFF2371 at 425.952 kb on - strand, within GFF2371 at 426.146 kb on + strand, within GFF2371 at 426.147 kb on - strand, within GFF2371 at 426.169 kb on + strand, within GFF2371
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 423,546 + GFF2369 0.24 -1.1 423,546 + GFF2369 0.24 +1.2 423,579 + GFF2369 0.28 +0.7 423,844 - GFF2369 0.58 +0.3 424,033 + GFF2369 0.79 +2.3 424,054 - GFF2369 0.82 -2.1 424,120 - GFF2369 0.89 +0.3 424,120 - GFF2369 0.89 +0.6 424,638 + GFF2370 0.35 -0.5 424,638 + GFF2370 0.35 -1.5 424,638 + GFF2370 0.35 -0.9 424,639 - GFF2370 0.35 -2.4 424,639 - GFF2370 0.35 -1.5 424,639 - GFF2370 0.35 -1.5 424,639 - GFF2370 0.35 -2.1 424,639 - GFF2370 0.35 -0.5 424,639 - GFF2370 0.35 -0.6 424,639 - GFF2370 0.35 -1.4 424,639 - GFF2370 0.35 -0.7 424,783 - GFF2370 0.47 -1.6 424,783 - GFF2370 0.47 -2.3 424,783 - GFF2370 0.47 -0.9 424,812 + GFF2370 0.49 +3.0 424,854 + GFF2370 0.53 -1.9 424,876 - GFF2370 0.55 +0.2 424,987 - GFF2370 0.64 -0.5 424,987 - GFF2370 0.64 -0.1 425,005 - GFF2370 0.65 -1.8 425,005 - GFF2370 0.65 -2.2 425,005 - GFF2370 0.65 -0.9 425,005 - GFF2370 0.65 +0.8 425,220 + GFF2370 0.83 -1.5 425,220 + GFF2370 0.83 -2.9 425,221 - GFF2370 0.83 -0.6 425,298 + GFF2370 0.90 -1.3 425,855 + GFF2371 0.42 -0.2 425,855 + GFF2371 0.42 -0.6 425,855 + GFF2371 0.42 -1.5 425,855 + GFF2371 0.42 +0.8 425,856 - GFF2371 0.42 -1.5 425,945 + GFF2371 0.51 -0.4 425,945 + GFF2371 0.51 -0.7 425,945 + GFF2371 0.51 -0.1 425,945 + GFF2371 0.51 -0.1 425,945 + GFF2371 0.51 -0.3 425,945 + GFF2371 0.51 -3.1 425,945 + GFF2371 0.51 -0.1 425,946 - GFF2371 0.51 +0.6 425,946 - GFF2371 0.51 -0.1 425,946 - GFF2371 0.51 -1.1 425,951 + GFF2371 0.52 -0.1 425,952 - GFF2371 0.52 -0.8 425,952 - GFF2371 0.52 +3.0 425,952 - GFF2371 0.52 +0.5 426,146 + GFF2371 0.71 -0.7 426,147 - GFF2371 0.71 -0.3 426,169 + GFF2371 0.73 -1.5
Or see this region's nucleotide sequence