Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2283 and GFF2284 are separated by 106 nucleotides GFF2284 and GFF2285 are separated by 5 nucleotides GFF2285 and GFF2286 are separated by 117 nucleotides
GFF2283 - Enoyl-CoA hydratase (EC 4.2.1.17), at 338,627 to 339,400
GFF2283
GFF2284 - FIG00538168: hypothetical protein, at 339,507 to 340,385
GFF2284
GFF2285 - Transcriptional regulator, RpiR family, at 340,391 to 341,281
GFF2285
GFF2286 - BUG/TctC family periplasmic protein, at 341,399 to 342,394
GFF2286
Position (kb) 340
341
342 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 339.429 kb on - strand at 339.583 kb on - strand at 339.583 kb on - strand at 339.583 kb on - strand at 339.595 kb on - strand, within GFF2284 at 339.595 kb on - strand, within GFF2284 at 339.615 kb on + strand, within GFF2284 at 339.615 kb on + strand, within GFF2284 at 339.615 kb on + strand, within GFF2284 at 339.615 kb on + strand, within GFF2284 at 339.615 kb on + strand, within GFF2284 at 339.616 kb on - strand, within GFF2284 at 339.616 kb on - strand, within GFF2284 at 339.616 kb on - strand, within GFF2284 at 339.616 kb on - strand, within GFF2284 at 339.660 kb on + strand, within GFF2284 at 339.660 kb on + strand, within GFF2284 at 339.661 kb on - strand, within GFF2284 at 339.661 kb on - strand, within GFF2284 at 339.661 kb on - strand, within GFF2284 at 339.663 kb on + strand, within GFF2284 at 339.897 kb on + strand, within GFF2284 at 339.898 kb on - strand, within GFF2284 at 339.898 kb on - strand, within GFF2284 at 339.906 kb on + strand, within GFF2284 at 339.906 kb on + strand, within GFF2284 at 339.906 kb on + strand, within GFF2284 at 339.930 kb on + strand, within GFF2284 at 339.930 kb on + strand, within GFF2284 at 339.930 kb on + strand, within GFF2284 at 339.930 kb on + strand, within GFF2284 at 339.931 kb on - strand, within GFF2284 at 339.931 kb on - strand, within GFF2284 at 340.030 kb on - strand, within GFF2284 at 340.185 kb on + strand, within GFF2284 at 340.186 kb on - strand, within GFF2284 at 340.186 kb on - strand, within GFF2284 at 340.209 kb on + strand, within GFF2284 at 340.210 kb on - strand, within GFF2284 at 340.210 kb on - strand, within GFF2284 at 340.532 kb on + strand, within GFF2285 at 340.551 kb on + strand, within GFF2285 at 340.551 kb on + strand, within GFF2285 at 340.552 kb on - strand, within GFF2285 at 340.671 kb on + strand, within GFF2285 at 340.671 kb on + strand, within GFF2285 at 340.671 kb on + strand, within GFF2285 at 340.672 kb on - strand, within GFF2285 at 341.094 kb on + strand, within GFF2285 at 341.094 kb on + strand, within GFF2285 at 341.095 kb on - strand, within GFF2285 at 341.095 kb on - strand, within GFF2285 at 341.253 kb on + strand at 341.253 kb on + strand at 341.387 kb on - strand at 341.567 kb on + strand, within GFF2286 at 341.567 kb on + strand, within GFF2286 at 341.567 kb on + strand, within GFF2286 at 341.567 kb on + strand, within GFF2286 at 341.568 kb on - strand, within GFF2286 at 341.678 kb on + strand, within GFF2286 at 341.679 kb on - strand, within GFF2286 at 341.679 kb on - strand, within GFF2286 at 341.744 kb on + strand, within GFF2286 at 341.745 kb on - strand, within GFF2286 at 341.882 kb on + strand, within GFF2286 at 341.882 kb on + strand, within GFF2286 at 341.883 kb on - strand, within GFF2286 at 341.883 kb on - strand, within GFF2286 at 341.883 kb on - strand, within GFF2286 at 341.883 kb on - strand, within GFF2286
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 339,429 - -0.0 339,583 - +0.8 339,583 - -1.9 339,583 - +0.2 339,595 - GFF2284 0.10 -1.8 339,595 - GFF2284 0.10 -1.1 339,615 + GFF2284 0.12 +0.2 339,615 + GFF2284 0.12 -1.3 339,615 + GFF2284 0.12 -0.1 339,615 + GFF2284 0.12 -2.0 339,615 + GFF2284 0.12 -0.3 339,616 - GFF2284 0.12 +1.5 339,616 - GFF2284 0.12 +0.0 339,616 - GFF2284 0.12 -1.5 339,616 - GFF2284 0.12 -2.5 339,660 + GFF2284 0.17 -2.9 339,660 + GFF2284 0.17 +0.1 339,661 - GFF2284 0.18 +0.8 339,661 - GFF2284 0.18 +1.3 339,661 - GFF2284 0.18 -4.5 339,663 + GFF2284 0.18 -1.1 339,897 + GFF2284 0.44 -0.5 339,898 - GFF2284 0.44 -1.0 339,898 - GFF2284 0.44 -0.7 339,906 + GFF2284 0.45 +1.5 339,906 + GFF2284 0.45 -0.4 339,906 + GFF2284 0.45 -0.4 339,930 + GFF2284 0.48 -2.5 339,930 + GFF2284 0.48 -1.6 339,930 + GFF2284 0.48 +0.2 339,930 + GFF2284 0.48 -1.0 339,931 - GFF2284 0.48 +0.7 339,931 - GFF2284 0.48 -1.9 340,030 - GFF2284 0.59 -1.0 340,185 + GFF2284 0.77 +0.6 340,186 - GFF2284 0.77 -0.5 340,186 - GFF2284 0.77 +1.3 340,209 + GFF2284 0.80 -0.3 340,210 - GFF2284 0.80 +0.6 340,210 - GFF2284 0.80 -0.3 340,532 + GFF2285 0.16 -2.6 340,551 + GFF2285 0.18 -0.6 340,551 + GFF2285 0.18 -0.5 340,552 - GFF2285 0.18 +0.9 340,671 + GFF2285 0.31 -1.4 340,671 + GFF2285 0.31 -0.0 340,671 + GFF2285 0.31 -1.7 340,672 - GFF2285 0.32 +0.1 341,094 + GFF2285 0.79 -2.5 341,094 + GFF2285 0.79 -0.0 341,095 - GFF2285 0.79 -0.3 341,095 - GFF2285 0.79 -0.0 341,253 + -1.2 341,253 + -1.9 341,387 - -0.1 341,567 + GFF2286 0.17 -1.8 341,567 + GFF2286 0.17 +0.7 341,567 + GFF2286 0.17 +0.2 341,567 + GFF2286 0.17 -1.5 341,568 - GFF2286 0.17 +0.3 341,678 + GFF2286 0.28 +0.5 341,679 - GFF2286 0.28 -2.0 341,679 - GFF2286 0.28 +0.4 341,744 + GFF2286 0.35 -0.0 341,745 - GFF2286 0.35 -2.6 341,882 + GFF2286 0.48 -0.6 341,882 + GFF2286 0.48 -0.8 341,883 - GFF2286 0.49 -1.4 341,883 - GFF2286 0.49 -1.6 341,883 - GFF2286 0.49 -0.5 341,883 - GFF2286 0.49 +1.6
Or see this region's nucleotide sequence