Strain Fitness in Variovorax sp. SCN45 around GFF2242

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
299,437	-		GFF2240	0.47	+1.6
299,544	+		GFF2240	0.68	-0.3
299,667	+				-0.3
299,974	+		GFF2241	0.24	-2.1
299,975	-		GFF2241	0.24	-0.8
299,980	+		GFF2241	0.25	+0.6
299,981	-		GFF2241	0.25	+1.6
299,981	-		GFF2241	0.25	+0.9
299,981	-		GFF2241	0.25	-0.8
300,196	+		GFF2241	0.61	+1.0
300,196	+		GFF2241	0.61	-1.3
300,196	+		GFF2241	0.61	-2.1
300,197	-		GFF2241	0.61	-1.8
300,197	-		GFF2241	0.61	-0.1
300,197	-		GFF2241	0.61	-0.8
300,397	+				+1.6
300,397	+				+0.0
300,398	-				-1.6
300,398	-				+0.9
300,433	+				-0.3
300,434	-				+0.0
300,520	+		GFF2242	0.35	-2.0
300,529	+		GFF2242	0.39	+1.2
300,529	+		GFF2242	0.39	+0.2
300,529	+		GFF2242	0.39	+0.1
300,529	+		GFF2242	0.39	+0.7
300,529	+		GFF2242	0.39	+1.6
300,529	+		GFF2242	0.39	-0.1
300,529	+		GFF2242	0.39	-1.5
300,530	-		GFF2242	0.39	-1.3
300,530	-		GFF2242	0.39	-1.0
300,530	-		GFF2242	0.39	+0.8
300,530	-		GFF2242	0.39	+0.8
300,530	-		GFF2242	0.39	+1.7
300,766	+				+1.2
300,766	+				-0.7
300,767	-				+0.8
300,777	-				+0.0
301,522	+		GFF2243	0.72	+0.4
301,522	+		GFF2243	0.72	-1.2
301,522	+		GFF2243	0.72	-0.4
301,523	-		GFF2243	0.72	+0.7
301,523	-		GFF2243	0.72	-2.4
301,523	-		GFF2243	0.72	-0.2