Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1912 and GFF1913 are separated by 106 nucleotides GFF1913 and GFF1914 are separated by 78 nucleotides GFF1914 and GFF1915 are separated by 86 nucleotides GFF1915 and GFF1916 are separated by 111 nucleotides
GFF1912 - Transcriptional regulator, LysR family, at 592,195 to 593,076
GFF1912
GFF1913 - Short-chain dehydrogenase, at 593,183 to 593,788
GFF1913
GFF1914 - Guanine deaminase (EC 3.5.4.3), at 593,867 to 595,153
GFF1914
GFF1915 - Deoxycytidine triphosphate deaminase (EC 3.5.4.13), at 595,240 to 595,806
GFF1915
GFF1916 - YpfJ protein, zinc metalloprotease superfamily, at 595,918 to 596,805
GFF1916
Position (kb) 593
594
595
596 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 592.884 kb on - strand, within GFF1912 at 592.884 kb on - strand, within GFF1912 at 592.884 kb on - strand, within GFF1912 at 593.076 kb on + strand at 593.120 kb on + strand at 593.157 kb on + strand at 593.157 kb on + strand at 593.158 kb on - strand at 593.333 kb on + strand, within GFF1913 at 593.333 kb on + strand, within GFF1913 at 593.333 kb on + strand, within GFF1913 at 593.333 kb on + strand, within GFF1913 at 593.333 kb on + strand, within GFF1913 at 593.333 kb on + strand, within GFF1913 at 593.333 kb on + strand, within GFF1913 at 593.333 kb on + strand, within GFF1913 at 593.333 kb on + strand, within GFF1913 at 593.333 kb on + strand, within GFF1913 at 593.334 kb on - strand, within GFF1913 at 593.334 kb on - strand, within GFF1913 at 593.334 kb on - strand, within GFF1913 at 593.334 kb on - strand, within GFF1913 at 593.675 kb on + strand, within GFF1913 at 593.675 kb on + strand, within GFF1913 at 593.676 kb on - strand, within GFF1913 at 593.732 kb on + strand at 593.732 kb on + strand at 593.732 kb on + strand at 593.732 kb on + strand at 593.732 kb on + strand at 593.733 kb on - strand at 593.733 kb on - strand at 593.733 kb on - strand at 593.804 kb on - strand at 593.804 kb on - strand at 593.805 kb on + strand at 593.805 kb on + strand at 593.805 kb on + strand at 593.805 kb on + strand at 593.805 kb on + strand at 593.805 kb on + strand at 593.805 kb on + strand at 593.805 kb on + strand at 593.805 kb on + strand at 593.805 kb on + strand at 593.805 kb on + strand at 593.806 kb on - strand at 593.806 kb on - strand at 593.806 kb on - strand at 593.806 kb on - strand at 593.806 kb on - strand at 593.806 kb on - strand at 593.806 kb on - strand at 593.806 kb on - strand at 593.814 kb on + strand at 593.814 kb on + strand at 593.814 kb on + strand at 593.815 kb on - strand at 593.815 kb on - strand at 593.815 kb on - strand at 593.815 kb on - strand at 593.850 kb on + strand at 593.850 kb on + strand at 594.149 kb on + strand, within GFF1914 at 594.149 kb on + strand, within GFF1914 at 594.149 kb on + strand, within GFF1914 at 594.149 kb on + strand, within GFF1914 at 594.150 kb on - strand, within GFF1914 at 594.150 kb on - strand, within GFF1914 at 594.150 kb on - strand, within GFF1914 at 594.521 kb on + strand, within GFF1914 at 594.522 kb on - strand, within GFF1914 at 594.591 kb on - strand, within GFF1914 at 594.620 kb on + strand, within GFF1914 at 594.620 kb on + strand, within GFF1914 at 594.620 kb on + strand, within GFF1914 at 594.621 kb on - strand, within GFF1914 at 594.621 kb on - strand, within GFF1914 at 594.656 kb on + strand, within GFF1914 at 594.671 kb on + strand, within GFF1914 at 594.671 kb on + strand, within GFF1914 at 594.671 kb on + strand, within GFF1914 at 594.672 kb on - strand, within GFF1914 at 594.800 kb on + strand, within GFF1914 at 594.866 kb on + strand, within GFF1914 at 594.867 kb on - strand, within GFF1914 at 594.867 kb on - strand, within GFF1914 at 594.867 kb on - strand, within GFF1914 at 594.867 kb on - strand, within GFF1914 at 594.869 kb on + strand, within GFF1914 at 594.869 kb on + strand, within GFF1914 at 594.869 kb on + strand, within GFF1914 at 594.869 kb on + strand, within GFF1914 at 594.869 kb on + strand, within GFF1914 at 594.869 kb on + strand, within GFF1914 at 594.869 kb on + strand, within GFF1914 at 594.869 kb on + strand, within GFF1914 at 594.869 kb on + strand, within GFF1914 at 594.869 kb on + strand, within GFF1914 at 594.870 kb on - strand, within GFF1914 at 594.870 kb on - strand, within GFF1914 at 594.870 kb on - strand, within GFF1914 at 594.870 kb on - strand, within GFF1914 at 594.870 kb on - strand, within GFF1914 at 594.870 kb on - strand, within GFF1914 at 594.870 kb on - strand, within GFF1914 at 594.870 kb on - strand, within GFF1914 at 595.151 kb on + strand at 595.151 kb on + strand at 595.151 kb on + strand at 595.151 kb on + strand at 595.152 kb on - strand at 595.239 kb on + strand at 595.862 kb on + strand at 595.862 kb on + strand at 595.862 kb on + strand at 595.862 kb on + strand at 595.862 kb on + strand at 595.862 kb on + strand at 595.862 kb on + strand at 595.862 kb on + strand at 595.862 kb on + strand at 595.862 kb on + strand at 595.862 kb on + strand at 595.862 kb on + strand at 595.862 kb on + strand at 595.862 kb on + strand at 595.863 kb on - strand at 595.863 kb on - strand at 596.064 kb on + strand, within GFF1916 at 596.065 kb on - strand, within GFF1916
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 592,884 - GFF1912 0.78 -0.4 592,884 - GFF1912 0.78 -1.5 592,884 - GFF1912 0.78 -3.0 593,076 + +0.2 593,120 + +1.9 593,157 + -1.7 593,157 + -1.3 593,158 - -1.0 593,333 + GFF1913 0.25 -1.8 593,333 + GFF1913 0.25 -1.6 593,333 + GFF1913 0.25 -1.1 593,333 + GFF1913 0.25 -2.0 593,333 + GFF1913 0.25 +0.8 593,333 + GFF1913 0.25 -2.4 593,333 + GFF1913 0.25 -1.0 593,333 + GFF1913 0.25 -0.4 593,333 + GFF1913 0.25 -1.2 593,333 + GFF1913 0.25 -1.0 593,334 - GFF1913 0.25 +0.2 593,334 - GFF1913 0.25 +1.0 593,334 - GFF1913 0.25 -1.7 593,334 - GFF1913 0.25 +1.6 593,675 + GFF1913 0.81 -1.1 593,675 + GFF1913 0.81 -1.7 593,676 - GFF1913 0.81 -1.0 593,732 + +1.7 593,732 + -0.6 593,732 + -1.0 593,732 + -1.2 593,732 + -1.2 593,733 - -0.5 593,733 - +0.5 593,733 - +0.9 593,804 - +0.9 593,804 - -2.5 593,805 + +1.8 593,805 + -0.5 593,805 + -1.0 593,805 + -1.0 593,805 + -2.2 593,805 + +2.7 593,805 + -0.8 593,805 + -0.0 593,805 + -2.0 593,805 + +0.4 593,805 + -1.2 593,806 - +2.5 593,806 - -0.0 593,806 - -0.2 593,806 - +0.5 593,806 - +0.6 593,806 - -0.2 593,806 - -0.3 593,806 - +0.4 593,814 + -1.8 593,814 + +0.5 593,814 + -1.5 593,815 - +0.2 593,815 - +0.2 593,815 - -0.0 593,815 - -0.3 593,850 + +0.7 593,850 + -1.7 594,149 + GFF1914 0.22 -0.4 594,149 + GFF1914 0.22 +0.0 594,149 + GFF1914 0.22 +0.7 594,149 + GFF1914 0.22 -1.3 594,150 - GFF1914 0.22 -1.2 594,150 - GFF1914 0.22 +0.4 594,150 - GFF1914 0.22 -1.8 594,521 + GFF1914 0.51 +0.8 594,522 - GFF1914 0.51 +0.8 594,591 - GFF1914 0.56 -0.2 594,620 + GFF1914 0.59 -3.1 594,620 + GFF1914 0.59 -0.3 594,620 + GFF1914 0.59 +0.3 594,621 - GFF1914 0.59 -1.2 594,621 - GFF1914 0.59 -2.1 594,656 + GFF1914 0.61 +0.4 594,671 + GFF1914 0.62 +1.0 594,671 + GFF1914 0.62 -1.6 594,671 + GFF1914 0.62 +0.0 594,672 - GFF1914 0.63 -1.2 594,800 + GFF1914 0.72 +1.8 594,866 + GFF1914 0.78 +1.4 594,867 - GFF1914 0.78 +0.2 594,867 - GFF1914 0.78 -0.2 594,867 - GFF1914 0.78 -0.2 594,867 - GFF1914 0.78 -0.8 594,869 + GFF1914 0.78 -1.7 594,869 + GFF1914 0.78 -2.0 594,869 + GFF1914 0.78 -0.8 594,869 + GFF1914 0.78 +0.4 594,869 + GFF1914 0.78 +0.2 594,869 + GFF1914 0.78 -1.3 594,869 + GFF1914 0.78 -1.2 594,869 + GFF1914 0.78 +1.6 594,869 + GFF1914 0.78 -1.9 594,869 + GFF1914 0.78 -0.8 594,870 - GFF1914 0.78 -1.2 594,870 - GFF1914 0.78 -0.5 594,870 - GFF1914 0.78 +0.8 594,870 - GFF1914 0.78 -3.8 594,870 - GFF1914 0.78 -1.1 594,870 - GFF1914 0.78 -2.1 594,870 - GFF1914 0.78 -1.0 594,870 - GFF1914 0.78 +1.4 595,151 + -0.4 595,151 + -0.7 595,151 + -1.0 595,151 + +2.7 595,152 - -0.8 595,239 + +0.2 595,862 + -1.1 595,862 + -0.2 595,862 + +0.1 595,862 + -1.8 595,862 + -2.3 595,862 + -0.2 595,862 + -1.0 595,862 + -0.4 595,862 + +0.2 595,862 + -1.3 595,862 + -1.6 595,862 + -0.0 595,862 + -0.2 595,862 + -0.4 595,863 - +0.1 595,863 - -1.8 596,064 + GFF1916 0.16 +0.2 596,065 - GFF1916 0.17 +0.3
Or see this region's nucleotide sequence