Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1885 and GFF1886 are separated by 124 nucleotides GFF1886 and GFF1887 are separated by 16 nucleotides
GFF1885 - Gluconate transporter family protein, at 559,072 to 560,454
GFF1885
GFF1886 - Elongation factor G-like protein TM_1651, at 560,579 to 562,639
GFF1886
GFF1887 - Fumarate hydratase class II (EC 4.2.1.2), at 562,656 to 564,038
GFF1887
Position (kb) 560
561
562
563 Strain fitness (log2 ratio) -2
-1
0
1
2 at 560.277 kb on - strand, within GFF1885 at 560.347 kb on + strand at 560.348 kb on - strand at 560.957 kb on + strand, within GFF1886 at 560.957 kb on + strand, within GFF1886 at 560.958 kb on - strand, within GFF1886 at 561.222 kb on - strand, within GFF1886 at 561.500 kb on + strand, within GFF1886 at 561.500 kb on + strand, within GFF1886 at 561.500 kb on + strand, within GFF1886 at 561.500 kb on + strand, within GFF1886 at 561.500 kb on + strand, within GFF1886 at 561.500 kb on + strand, within GFF1886 at 561.500 kb on + strand, within GFF1886 at 561.500 kb on + strand, within GFF1886 at 561.500 kb on + strand, within GFF1886 at 561.500 kb on + strand, within GFF1886 at 561.501 kb on - strand, within GFF1886 at 561.501 kb on - strand, within GFF1886 at 561.501 kb on - strand, within GFF1886 at 561.563 kb on + strand, within GFF1886 at 561.897 kb on - strand, within GFF1886 at 561.950 kb on + strand, within GFF1886 at 561.951 kb on - strand, within GFF1886 at 562.129 kb on - strand, within GFF1886 at 562.244 kb on + strand, within GFF1886 at 562.244 kb on + strand, within GFF1886 at 562.245 kb on - strand, within GFF1886 at 562.245 kb on - strand, within GFF1886 at 562.245 kb on - strand, within GFF1886 at 562.245 kb on - strand, within GFF1886 at 562.508 kb on + strand at 562.551 kb on - strand at 562.616 kb on + strand at 562.617 kb on - strand at 562.690 kb on + strand at 562.691 kb on - strand at 562.691 kb on - strand at 562.691 kb on - strand at 562.691 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 560,277 - GFF1885 0.87 +2.7 560,347 + +0.1 560,348 - -1.3 560,957 + GFF1886 0.18 +0.3 560,957 + GFF1886 0.18 +0.6 560,958 - GFF1886 0.18 +0.7 561,222 - GFF1886 0.31 +0.5 561,500 + GFF1886 0.45 -2.5 561,500 + GFF1886 0.45 -1.2 561,500 + GFF1886 0.45 +2.4 561,500 + GFF1886 0.45 +0.8 561,500 + GFF1886 0.45 -1.4 561,500 + GFF1886 0.45 -1.6 561,500 + GFF1886 0.45 -2.4 561,500 + GFF1886 0.45 -0.6 561,500 + GFF1886 0.45 -1.7 561,500 + GFF1886 0.45 -1.1 561,501 - GFF1886 0.45 -2.2 561,501 - GFF1886 0.45 -0.6 561,501 - GFF1886 0.45 +0.0 561,563 + GFF1886 0.48 +0.5 561,897 - GFF1886 0.64 -1.7 561,950 + GFF1886 0.67 -2.0 561,951 - GFF1886 0.67 +0.0 562,129 - GFF1886 0.75 -0.2 562,244 + GFF1886 0.81 -0.9 562,244 + GFF1886 0.81 -0.4 562,245 - GFF1886 0.81 -1.6 562,245 - GFF1886 0.81 -2.2 562,245 - GFF1886 0.81 -1.6 562,245 - GFF1886 0.81 +1.8 562,508 + -2.2 562,551 - +1.8 562,616 + -0.0 562,617 - +0.4 562,690 + -1.9 562,691 - +0.5 562,691 - -0.6 562,691 - +0.2 562,691 - -0.0
Or see this region's nucleotide sequence