Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1686 and GFF1687 overlap by 4 nucleotides GFF1687 and GFF1688 are separated by 19 nucleotides
GFF1686 - Uncharacterized protein Bsu YraM, at 330,647 to 331,819
GFF1686
GFF1687 - BUG/TctC family periplasmic protein, at 331,816 to 332,793
GFF1687
GFF1688 - FIG00828468: hypothetical protein, at 332,813 to 334,240
GFF1688
Position (kb) 331
332
333 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 330.894 kb on - strand, within GFF1686 at 330.894 kb on - strand, within GFF1686 at 330.894 kb on - strand, within GFF1686 at 331.034 kb on + strand, within GFF1686 at 331.035 kb on - strand, within GFF1686 at 331.035 kb on - strand, within GFF1686 at 331.793 kb on + strand at 331.793 kb on + strand at 331.793 kb on + strand at 331.793 kb on + strand at 331.794 kb on - strand at 331.794 kb on - strand at 331.794 kb on - strand at 331.872 kb on + strand at 331.969 kb on + strand, within GFF1687 at 331.969 kb on + strand, within GFF1687 at 331.970 kb on - strand, within GFF1687 at 332.131 kb on + strand, within GFF1687 at 332.255 kb on - strand, within GFF1687 at 332.372 kb on - strand, within GFF1687 at 332.372 kb on - strand, within GFF1687 at 333.122 kb on + strand, within GFF1688 at 333.123 kb on - strand, within GFF1688 at 333.240 kb on - strand, within GFF1688 at 333.434 kb on + strand, within GFF1688 at 333.488 kb on + strand, within GFF1688 at 333.489 kb on - strand, within GFF1688 at 333.515 kb on + strand, within GFF1688 at 333.515 kb on + strand, within GFF1688 at 333.656 kb on + strand, within GFF1688 at 333.774 kb on - strand, within GFF1688
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 330,894 - GFF1686 0.21 -0.3 330,894 - GFF1686 0.21 +0.5 330,894 - GFF1686 0.21 -0.4 331,034 + GFF1686 0.33 +1.6 331,035 - GFF1686 0.33 -2.2 331,035 - GFF1686 0.33 -0.2 331,793 + -0.2 331,793 + +1.1 331,793 + +1.6 331,793 + -0.2 331,794 - -4.0 331,794 - -0.4 331,794 - -0.2 331,872 + -1.5 331,969 + GFF1687 0.16 +0.6 331,969 + GFF1687 0.16 +0.5 331,970 - GFF1687 0.16 -1.0 332,131 + GFF1687 0.32 +0.0 332,255 - GFF1687 0.45 +0.2 332,372 - GFF1687 0.57 -3.1 332,372 - GFF1687 0.57 -1.7 333,122 + GFF1688 0.22 +1.4 333,123 - GFF1688 0.22 -0.2 333,240 - GFF1688 0.30 +0.8 333,434 + GFF1688 0.43 +0.8 333,488 + GFF1688 0.47 -0.7 333,489 - GFF1688 0.47 -2.1 333,515 + GFF1688 0.49 -0.6 333,515 + GFF1688 0.49 -0.6 333,656 + GFF1688 0.59 +0.2 333,774 - GFF1688 0.67 -0.6
Or see this region's nucleotide sequence