Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1664 and GFF1665 overlap by 4 nucleotides GFF1665 and GFF1666 overlap by 4 nucleotides
GFF1664 - redox proteins related to the succinate dehydrogenases and fumarate reductases, at 307,969 to 309,384
GFF1664
GFF1665 - Nicotinamidase/isochorismatase family protein, at 309,381 to 309,995
GFF1665
GFF1666 - N-methylhydantoinase A (EC 3.5.2.14), at 309,992 to 312,049
GFF1666
Position (kb) 309
310 Strain fitness (log2 ratio) -2
-1
0
1 at 308.437 kb on + strand, within GFF1664 at 308.437 kb on + strand, within GFF1664 at 308.437 kb on + strand, within GFF1664 at 308.438 kb on - strand, within GFF1664 at 308.438 kb on - strand, within GFF1664 at 308.438 kb on - strand, within GFF1664 at 308.438 kb on - strand, within GFF1664 at 309.065 kb on + strand, within GFF1664 at 309.065 kb on + strand, within GFF1664 at 309.066 kb on - strand, within GFF1664 at 309.637 kb on + strand, within GFF1665 at 309.907 kb on + strand, within GFF1665 at 309.907 kb on + strand, within GFF1665 at 309.907 kb on + strand, within GFF1665 at 310.318 kb on - strand, within GFF1666 at 310.707 kb on + strand, within GFF1666 at 310.707 kb on + strand, within GFF1666 at 310.707 kb on + strand, within GFF1666 at 310.707 kb on + strand, within GFF1666 at 310.708 kb on - strand, within GFF1666 at 310.708 kb on - strand, within GFF1666 at 310.708 kb on - strand, within GFF1666
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 308,437 + GFF1664 0.33 +0.9 308,437 + GFF1664 0.33 -1.9 308,437 + GFF1664 0.33 -1.6 308,438 - GFF1664 0.33 +0.8 308,438 - GFF1664 0.33 -0.0 308,438 - GFF1664 0.33 +0.0 308,438 - GFF1664 0.33 -1.8 309,065 + GFF1664 0.77 +0.8 309,065 + GFF1664 0.77 +1.3 309,066 - GFF1664 0.77 +0.7 309,637 + GFF1665 0.42 +1.4 309,907 + GFF1665 0.86 +0.0 309,907 + GFF1665 0.86 +0.2 309,907 + GFF1665 0.86 -1.1 310,318 - GFF1666 0.16 +1.1 310,707 + GFF1666 0.35 +0.7 310,707 + GFF1666 0.35 -1.0 310,707 + GFF1666 0.35 +1.2 310,707 + GFF1666 0.35 +0.0 310,708 - GFF1666 0.35 +1.0 310,708 - GFF1666 0.35 +1.6 310,708 - GFF1666 0.35 -0.1
Or see this region's nucleotide sequence