Strain Fitness in Variovorax sp. SCN45 around GFF1634

Experiment: Community=guar; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1633 and GFF1634 are separated by 126 nucleotidesGFF1634 and GFF1635 are separated by 109 nucleotides GFF1633 - Probable transmembrane sensor, at 234,704 to 235,771 GFF1633 GFF1634 - Ferrichrome-iron receptor, at 235,898 to 238,288 GFF1634 GFF1635 - Polyketide synthase modules and related proteins, at 238,398 to 256,793 GFF1635 Position (kb) 235 236 237 238 239Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 235.050 kb on - strand, within GFF1633at 235.050 kb on - strand, within GFF1633at 235.079 kb on + strand, within GFF1633at 235.079 kb on + strand, within GFF1633at 235.079 kb on + strand, within GFF1633at 235.079 kb on + strand, within GFF1633at 235.452 kb on + strand, within GFF1633at 235.452 kb on + strand, within GFF1633at 235.452 kb on + strand, within GFF1633at 235.453 kb on - strand, within GFF1633at 235.453 kb on - strand, within GFF1633at 235.453 kb on - strand, within GFF1633at 235.583 kb on + strand, within GFF1633at 235.583 kb on + strand, within GFF1633at 235.806 kb on + strandat 235.806 kb on + strandat 235.806 kb on + strandat 236.018 kb on - strandat 236.018 kb on - strandat 236.018 kb on - strandat 236.018 kb on - strandat 236.346 kb on - strand, within GFF1634at 236.346 kb on - strand, within GFF1634at 236.411 kb on + strand, within GFF1634at 236.474 kb on + strand, within GFF1634at 236.475 kb on - strand, within GFF1634at 236.475 kb on - strand, within GFF1634at 236.475 kb on - strand, within GFF1634at 236.475 kb on - strand, within GFF1634at 236.498 kb on - strand, within GFF1634at 236.498 kb on - strand, within GFF1634at 236.591 kb on + strand, within GFF1634at 236.591 kb on + strand, within GFF1634at 236.591 kb on + strand, within GFF1634at 236.592 kb on - strand, within GFF1634at 236.592 kb on - strand, within GFF1634at 236.660 kb on + strand, within GFF1634at 236.660 kb on + strand, within GFF1634at 236.693 kb on + strand, within GFF1634at 236.693 kb on + strand, within GFF1634at 236.693 kb on + strand, within GFF1634at 236.694 kb on - strand, within GFF1634at 236.694 kb on - strand, within GFF1634at 236.694 kb on - strand, within GFF1634at 236.700 kb on - strand, within GFF1634at 236.700 kb on - strand, within GFF1634at 236.700 kb on - strand, within GFF1634at 236.700 kb on - strand, within GFF1634at 236.700 kb on - strand, within GFF1634at 236.700 kb on - strand, within GFF1634at 236.747 kb on + strand, within GFF1634at 236.747 kb on + strand, within GFF1634at 236.747 kb on + strand, within GFF1634at 236.748 kb on - strand, within GFF1634at 236.765 kb on + strand, within GFF1634at 236.766 kb on - strand, within GFF1634at 236.766 kb on - strand, within GFF1634at 236.766 kb on - strand, within GFF1634at 236.954 kb on + strand, within GFF1634at 236.955 kb on - strand, within GFF1634at 237.093 kb on - strand, within GFF1634at 237.129 kb on - strand, within GFF1634at 237.129 kb on - strand, within GFF1634at 237.129 kb on - strand, within GFF1634at 237.314 kb on + strand, within GFF1634at 237.314 kb on + strand, within GFF1634at 237.314 kb on + strand, within GFF1634at 237.314 kb on + strand, within GFF1634at 237.314 kb on + strand, within GFF1634at 237.314 kb on + strand, within GFF1634at 237.314 kb on + strand, within GFF1634at 237.314 kb on + strand, within GFF1634at 237.314 kb on + strand, within GFF1634at 237.315 kb on - strand, within GFF1634at 237.315 kb on - strand, within GFF1634at 237.315 kb on - strand, within GFF1634at 237.315 kb on - strand, within GFF1634at 237.315 kb on - strand, within GFF1634at 237.315 kb on - strand, within GFF1634at 237.315 kb on - strand, within GFF1634at 237.315 kb on - strand, within GFF1634at 237.315 kb on - strand, within GFF1634at 237.315 kb on - strand, within GFF1634at 237.315 kb on - strand, within GFF1634at 237.320 kb on + strand, within GFF1634at 237.320 kb on + strand, within GFF1634at 237.320 kb on + strand, within GFF1634at 237.321 kb on - strand, within GFF1634at 237.321 kb on - strand, within GFF1634at 237.321 kb on - strand, within GFF1634at 237.321 kb on - strand, within GFF1634at 237.398 kb on + strand, within GFF1634at 237.398 kb on + strand, within GFF1634at 237.399 kb on - strand, within GFF1634at 237.399 kb on - strand, within GFF1634at 237.399 kb on - strand, within GFF1634at 237.431 kb on + strand, within GFF1634at 237.431 kb on + strand, within GFF1634at 237.440 kb on + strand, within GFF1634at 237.441 kb on - strand, within GFF1634at 237.444 kb on - strand, within GFF1634at 237.444 kb on - strand, within GFF1634at 237.470 kb on + strand, within GFF1634at 237.470 kb on + strand, within GFF1634at 237.470 kb on + strand, within GFF1634at 237.471 kb on - strand, within GFF1634at 237.471 kb on - strand, within GFF1634at 237.471 kb on - strand, within GFF1634at 237.626 kb on + strand, within GFF1634at 237.627 kb on - strand, within GFF1634at 237.627 kb on - strand, within GFF1634at 237.662 kb on + strand, within GFF1634at 237.663 kb on - strand, within GFF1634at 237.663 kb on - strand, within GFF1634at 237.821 kb on + strand, within GFF1634at 237.848 kb on + strand, within GFF1634at 238.020 kb on - strand, within GFF1634at 238.028 kb on + strand, within GFF1634at 238.071 kb on - strandat 238.073 kb on + strandat 238.074 kb on - strandat 238.152 kb on - strandat 238.235 kb on + strandat 238.235 kb on + strandat 238.236 kb on - strandat 238.236 kb on - strandat 238.236 kb on - strandat 238.236 kb on - strandat 238.238 kb on + strandat 238.238 kb on + strandat 238.238 kb on + strandat 238.239 kb on - strandat 238.239 kb on - strandat 238.239 kb on - strandat 238.239 kb on - strandat 238.242 kb on + strandat 238.242 kb on + strandat 238.242 kb on + strandat 238.242 kb on + strandat 238.242 kb on + strandat 238.242 kb on + strandat 238.243 kb on - strandat 238.243 kb on - strandat 238.592 kb on + strandat 238.592 kb on + strandat 238.593 kb on - strandat 238.593 kb on - strandat 238.894 kb on - strandat 238.954 kb on + strandat 238.954 kb on + strandat 238.955 kb on - strandat 238.955 kb on - strandat 238.955 kb on - strandat 238.955 kb on - strandat 239.098 kb on + strandat 239.099 kb on - strandat 239.171 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
remove
235,050 - GFF1633 0.32 +0.6
235,050 - GFF1633 0.32 -0.5
235,079 + GFF1633 0.35 +0.7
235,079 + GFF1633 0.35 -0.4
235,079 + GFF1633 0.35 +2.3
235,079 + GFF1633 0.35 -3.1
235,452 + GFF1633 0.70 +0.0
235,452 + GFF1633 0.70 -0.7
235,452 + GFF1633 0.70 -0.3
235,453 - GFF1633 0.70 +1.3
235,453 - GFF1633 0.70 -2.8
235,453 - GFF1633 0.70 -1.0
235,583 + GFF1633 0.82 -1.5
235,583 + GFF1633 0.82 -1.5
235,806 + -1.1
235,806 + -0.5
235,806 + -0.3
236,018 - -0.6
236,018 - -1.1
236,018 - -1.9
236,018 - +2.5
236,346 - GFF1634 0.19 -0.6
236,346 - GFF1634 0.19 -0.5
236,411 + GFF1634 0.21 -1.8
236,474 + GFF1634 0.24 -1.2
236,475 - GFF1634 0.24 -1.4
236,475 - GFF1634 0.24 -0.3
236,475 - GFF1634 0.24 -0.2
236,475 - GFF1634 0.24 +0.2
236,498 - GFF1634 0.25 +1.5
236,498 - GFF1634 0.25 -1.2
236,591 + GFF1634 0.29 -0.8
236,591 + GFF1634 0.29 -0.3
236,591 + GFF1634 0.29 -2.1
236,592 - GFF1634 0.29 +0.2
236,592 - GFF1634 0.29 -2.5
236,660 + GFF1634 0.32 -0.7
236,660 + GFF1634 0.32 +0.3
236,693 + GFF1634 0.33 -2.3
236,693 + GFF1634 0.33 +0.7
236,693 + GFF1634 0.33 +0.0
236,694 - GFF1634 0.33 -2.8
236,694 - GFF1634 0.33 +0.2
236,694 - GFF1634 0.33 -2.2
236,700 - GFF1634 0.34 -0.4
236,700 - GFF1634 0.34 +0.2
236,700 - GFF1634 0.34 -3.0
236,700 - GFF1634 0.34 -0.3
236,700 - GFF1634 0.34 +0.4
236,700 - GFF1634 0.34 +0.7
236,747 + GFF1634 0.36 +2.3
236,747 + GFF1634 0.36 -0.3
236,747 + GFF1634 0.36 +0.3
236,748 - GFF1634 0.36 +0.3
236,765 + GFF1634 0.36 +0.7
236,766 - GFF1634 0.36 -3.3
236,766 - GFF1634 0.36 -0.3
236,766 - GFF1634 0.36 +0.6
236,954 + GFF1634 0.44 +1.7
236,955 - GFF1634 0.44 -3.2
237,093 - GFF1634 0.50 -1.7
237,129 - GFF1634 0.51 +1.1
237,129 - GFF1634 0.51 -1.9
237,129 - GFF1634 0.51 -2.0
237,314 + GFF1634 0.59 -1.2
237,314 + GFF1634 0.59 +0.3
237,314 + GFF1634 0.59 -1.1
237,314 + GFF1634 0.59 -0.5
237,314 + GFF1634 0.59 -0.7
237,314 + GFF1634 0.59 -0.6
237,314 + GFF1634 0.59 -0.6
237,314 + GFF1634 0.59 -0.3
237,314 + GFF1634 0.59 -1.8
237,315 - GFF1634 0.59 -0.8
237,315 - GFF1634 0.59 -0.3
237,315 - GFF1634 0.59 +1.3
237,315 - GFF1634 0.59 -1.3
237,315 - GFF1634 0.59 +1.0
237,315 - GFF1634 0.59 -0.4
237,315 - GFF1634 0.59 -1.1
237,315 - GFF1634 0.59 +1.4
237,315 - GFF1634 0.59 -1.4
237,315 - GFF1634 0.59 -1.0
237,315 - GFF1634 0.59 +1.0
237,320 + GFF1634 0.59 -0.0
237,320 + GFF1634 0.59 -0.5
237,320 + GFF1634 0.59 -1.2
237,321 - GFF1634 0.60 +0.4
237,321 - GFF1634 0.60 -0.2
237,321 - GFF1634 0.60 -0.2
237,321 - GFF1634 0.60 +2.4
237,398 + GFF1634 0.63 -2.3
237,398 + GFF1634 0.63 -0.3
237,399 - GFF1634 0.63 -0.4
237,399 - GFF1634 0.63 +0.3
237,399 - GFF1634 0.63 +0.1
237,431 + GFF1634 0.64 -1.5
237,431 + GFF1634 0.64 +0.3
237,440 + GFF1634 0.64 -0.6
237,441 - GFF1634 0.65 -1.4
237,444 - GFF1634 0.65 -0.8
237,444 - GFF1634 0.65 -0.4
237,470 + GFF1634 0.66 -1.9
237,470 + GFF1634 0.66 -0.3
237,470 + GFF1634 0.66 -1.6
237,471 - GFF1634 0.66 +1.6
237,471 - GFF1634 0.66 +0.0
237,471 - GFF1634 0.66 -0.5
237,626 + GFF1634 0.72 -1.2
237,627 - GFF1634 0.72 +1.1
237,627 - GFF1634 0.72 +0.7
237,662 + GFF1634 0.74 -0.8
237,663 - GFF1634 0.74 -1.8
237,663 - GFF1634 0.74 +0.9
237,821 + GFF1634 0.80 +2.7
237,848 + GFF1634 0.82 +0.4
238,020 - GFF1634 0.89 +0.7
238,028 + GFF1634 0.89 +0.2
238,071 - +0.5
238,073 + +0.0
238,074 - +0.4
238,152 - -0.4
238,235 + -1.6
238,235 + +0.0
238,236 - +0.3
238,236 - +0.4
238,236 - -0.2
238,236 - +1.2
238,238 + +0.6
238,238 + -0.8
238,238 + +0.1
238,239 - +0.7
238,239 - +2.3
238,239 - +0.8
238,239 - -0.2
238,242 + +1.8
238,242 + -0.7
238,242 + +1.8
238,242 + -0.1
238,242 + -1.5
238,242 + -1.0
238,243 - -0.3
238,243 - +0.2
238,592 + +0.4
238,592 + +0.5
238,593 - -0.5
238,593 - -2.0
238,894 - +0.0
238,954 + -2.2
238,954 + +0.1
238,955 - -0.7
238,955 - +0.3
238,955 - +0.3
238,955 - -0.1
239,098 + -0.2
239,099 - -2.3
239,171 - -0.5

Or see this region's nucleotide sequence