Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1558 and GFF1559 are separated by 9 nucleotides GFF1559 and GFF1560 are separated by 186 nucleotides GFF1560 and GFF1561 are separated by 42 nucleotides
GFF1558 - Uncharacterized ATP-dependent DNA helicase PA3272, at 156,614 to 160,987
GFF1558
GFF1559 - Mg(2+)-transport-ATPase-associated protein MgtC, at 160,997 to 161,716
GFF1559
GFF1560 - hypothetical protein, at 161,903 to 162,370
GFF1560
GFF1561 - Aldehyde dehydrogenase (EC 1.2.1.3), at 162,413 to 163,849
GFF1561
Position (kb) 160
161
162 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 160.337 kb on + strand, within GFF1558 at 160.337 kb on + strand, within GFF1558 at 160.338 kb on - strand, within GFF1558 at 160.338 kb on - strand, within GFF1558 at 161.277 kb on + strand, within GFF1559 at 161.349 kb on + strand, within GFF1559 at 161.775 kb on + strand at 161.775 kb on + strand at 161.776 kb on - strand at 161.814 kb on + strand at 161.815 kb on - strand at 161.855 kb on + strand at 161.856 kb on - strand at 161.884 kb on + strand at 161.885 kb on - strand at 161.885 kb on - strand at 162.213 kb on + strand, within GFF1560 at 162.463 kb on - strand at 162.639 kb on + strand, within GFF1561 at 162.685 kb on - strand, within GFF1561
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 160,337 + GFF1558 0.85 -1.0 160,337 + GFF1558 0.85 -0.5 160,338 - GFF1558 0.85 +0.2 160,338 - GFF1558 0.85 -1.8 161,277 + GFF1559 0.39 -2.1 161,349 + GFF1559 0.49 +0.3 161,775 + -0.7 161,775 + -2.2 161,776 - -2.4 161,814 + -1.9 161,815 - -0.1 161,855 + -0.0 161,856 - -0.7 161,884 + -1.8 161,885 - -1.7 161,885 - -1.0 162,213 + GFF1560 0.66 -1.2 162,463 - -0.7 162,639 + GFF1561 0.16 -1.2 162,685 - GFF1561 0.19 -3.6
Or see this region's nucleotide sequence