Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1431 and GFF1432 overlap by 4 nucleotides GFF1432 and GFF1433 are separated by 62 nucleotides GFF1433 and GFF1434 are separated by 21 nucleotides GFF1434 and GFF1435 are separated by 109 nucleotides
GFF1431 - no description, at 21,938 to 22,504
GFF1431
GFF1432 - no description, at 22,501 to 23,301
GFF1432
GFF1433 - hypothetical protein, at 23,364 to 24,764
GFF1433
GFF1434 - hypothetical protein, at 24,786 to 25,469
GFF1434
GFF1435 - BUG/TctC family periplasmic protein, at 25,579 to 26,580
GFF1435
Position (kb) 23
24
25 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 22.452 kb on + strand at 22.651 kb on + strand, within GFF1432 at 23.215 kb on + strand, within GFF1432 at 23.216 kb on - strand, within GFF1432 at 23.216 kb on - strand, within GFF1432 at 23.440 kb on - strand at 23.547 kb on + strand, within GFF1433 at 23.548 kb on - strand, within GFF1433 at 23.548 kb on - strand, within GFF1433 at 23.548 kb on - strand, within GFF1433 at 23.548 kb on - strand, within GFF1433 at 23.796 kb on + strand, within GFF1433 at 23.797 kb on - strand, within GFF1433 at 23.797 kb on - strand, within GFF1433 at 24.160 kb on - strand, within GFF1433 at 24.213 kb on + strand, within GFF1433 at 24.214 kb on - strand, within GFF1433 at 24.214 kb on - strand, within GFF1433 at 24.216 kb on + strand, within GFF1433 at 24.340 kb on - strand, within GFF1433 at 24.480 kb on + strand, within GFF1433 at 24.480 kb on + strand, within GFF1433 at 24.481 kb on - strand, within GFF1433 at 24.481 kb on - strand, within GFF1433 at 24.519 kb on + strand, within GFF1433 at 24.519 kb on + strand, within GFF1433 at 24.520 kb on - strand, within GFF1433 at 24.520 kb on - strand, within GFF1433 at 24.520 kb on - strand, within GFF1433 at 24.675 kb on + strand at 25.309 kb on + strand, within GFF1434 at 25.321 kb on + strand, within GFF1434 at 25.321 kb on + strand, within GFF1434 at 25.462 kb on + strand at 25.463 kb on - strand at 25.463 kb on - strand at 25.463 kb on - strand at 25.511 kb on + strand at 25.511 kb on + strand at 25.511 kb on + strand at 25.512 kb on - strand at 25.512 kb on - strand at 25.548 kb on + strand at 25.548 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 22,452 + -0.9 22,651 + GFF1432 0.19 -0.9 23,215 + GFF1432 0.89 +0.4 23,216 - GFF1432 0.89 -1.3 23,216 - GFF1432 0.89 +1.6 23,440 - +2.3 23,547 + GFF1433 0.13 +0.1 23,548 - GFF1433 0.13 -0.3 23,548 - GFF1433 0.13 +0.5 23,548 - GFF1433 0.13 -0.9 23,548 - GFF1433 0.13 -0.7 23,796 + GFF1433 0.31 +1.7 23,797 - GFF1433 0.31 -0.2 23,797 - GFF1433 0.31 -1.4 24,160 - GFF1433 0.57 +2.4 24,213 + GFF1433 0.61 +0.6 24,214 - GFF1433 0.61 -0.5 24,214 - GFF1433 0.61 -2.3 24,216 + GFF1433 0.61 -1.8 24,340 - GFF1433 0.70 -0.4 24,480 + GFF1433 0.80 -0.5 24,480 + GFF1433 0.80 +1.7 24,481 - GFF1433 0.80 +0.5 24,481 - GFF1433 0.80 +0.8 24,519 + GFF1433 0.82 +0.5 24,519 + GFF1433 0.82 +0.2 24,520 - GFF1433 0.83 +0.4 24,520 - GFF1433 0.83 -0.7 24,520 - GFF1433 0.83 +0.4 24,675 + -0.0 25,309 + GFF1434 0.76 -3.1 25,321 + GFF1434 0.78 +0.3 25,321 + GFF1434 0.78 +1.1 25,462 + -1.9 25,463 - -0.0 25,463 - -0.2 25,463 - +1.6 25,511 + -1.4 25,511 + +1.3 25,511 + +0.7 25,512 - -2.4 25,512 - +0.8 25,548 + +0.4 25,548 + -0.3
Or see this region's nucleotide sequence