Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1375 and GFF1376 are separated by 57 nucleotides GFF1376 and GFF1377 are separated by 45 nucleotides GFF1377 and GFF1378 are separated by 31 nucleotides
GFF1375 - Transcriptional regulator, LysR family, at 721,648 to 722,565
GFF1375
GFF1376 - hypothetical protein, at 722,623 to 723,789
GFF1376
GFF1377 - Phosphohydrolase (MutT/nudix family protein), at 723,835 to 724,458
GFF1377
GFF1378 - no description, at 724,490 to 724,816
GFF1378
Position (kb) 722
723
724 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 721.701 kb on - strand at 721.701 kb on - strand at 721.701 kb on - strand at 721.736 kb on + strand at 721.736 kb on + strand at 721.736 kb on + strand at 721.736 kb on + strand at 721.736 kb on + strand at 721.736 kb on + strand at 721.737 kb on - strand at 721.737 kb on - strand at 721.737 kb on - strand at 721.739 kb on + strand at 721.739 kb on + strand at 721.739 kb on + strand at 721.739 kb on + strand at 721.740 kb on - strand, within GFF1375 at 721.740 kb on - strand, within GFF1375 at 721.740 kb on - strand, within GFF1375 at 721.742 kb on + strand, within GFF1375 at 721.742 kb on + strand, within GFF1375 at 721.743 kb on - strand, within GFF1375 at 721.743 kb on - strand, within GFF1375 at 721.743 kb on - strand, within GFF1375 at 722.576 kb on + strand at 722.577 kb on - strand at 722.577 kb on - strand at 722.725 kb on + strand at 722.726 kb on - strand at 722.726 kb on - strand at 722.743 kb on + strand, within GFF1376 at 722.743 kb on + strand, within GFF1376 at 722.743 kb on + strand, within GFF1376 at 722.743 kb on + strand, within GFF1376 at 722.743 kb on + strand, within GFF1376 at 722.744 kb on - strand, within GFF1376 at 722.744 kb on - strand, within GFF1376 at 722.744 kb on - strand, within GFF1376 at 722.744 kb on - strand, within GFF1376 at 722.744 kb on - strand, within GFF1376 at 722.842 kb on + strand, within GFF1376 at 722.843 kb on - strand, within GFF1376 at 722.843 kb on - strand, within GFF1376 at 722.911 kb on + strand, within GFF1376 at 722.911 kb on + strand, within GFF1376 at 723.304 kb on + strand, within GFF1376 at 723.304 kb on + strand, within GFF1376 at 723.304 kb on + strand, within GFF1376 at 723.305 kb on - strand, within GFF1376 at 723.694 kb on + strand at 723.694 kb on + strand at 723.695 kb on - strand at 723.695 kb on - strand at 723.695 kb on - strand at 723.928 kb on + strand, within GFF1377 at 723.928 kb on + strand, within GFF1377 at 723.928 kb on + strand, within GFF1377 at 723.929 kb on - strand, within GFF1377 at 724.332 kb on - strand, within GFF1377 at 724.414 kb on + strand at 724.415 kb on - strand at 724.415 kb on - strand at 724.453 kb on + strand at 724.454 kb on - strand at 724.579 kb on + strand, within GFF1378 at 724.580 kb on - strand, within GFF1378
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 721,701 - -1.0 721,701 - +0.4 721,701 - -0.2 721,736 + +0.1 721,736 + -0.2 721,736 + -0.1 721,736 + -1.1 721,736 + -2.0 721,736 + +0.2 721,737 - +1.2 721,737 - +1.3 721,737 - -0.2 721,739 + -2.0 721,739 + +2.6 721,739 + +1.1 721,739 + -1.5 721,740 - GFF1375 0.10 -0.1 721,740 - GFF1375 0.10 -0.6 721,740 - GFF1375 0.10 -1.1 721,742 + GFF1375 0.10 -0.8 721,742 + GFF1375 0.10 +1.1 721,743 - GFF1375 0.10 -1.0 721,743 - GFF1375 0.10 -0.1 721,743 - GFF1375 0.10 -0.1 722,576 + -0.8 722,577 - -1.1 722,577 - +0.6 722,725 + -0.9 722,726 - -1.2 722,726 - +0.1 722,743 + GFF1376 0.10 -0.4 722,743 + GFF1376 0.10 -1.8 722,743 + GFF1376 0.10 -1.8 722,743 + GFF1376 0.10 +1.2 722,743 + GFF1376 0.10 +0.7 722,744 - GFF1376 0.10 -0.2 722,744 - GFF1376 0.10 -1.3 722,744 - GFF1376 0.10 -0.3 722,744 - GFF1376 0.10 -0.5 722,744 - GFF1376 0.10 +0.9 722,842 + GFF1376 0.19 +1.0 722,843 - GFF1376 0.19 -0.2 722,843 - GFF1376 0.19 +0.3 722,911 + GFF1376 0.25 -2.8 722,911 + GFF1376 0.25 -0.0 723,304 + GFF1376 0.58 -0.5 723,304 + GFF1376 0.58 +0.8 723,304 + GFF1376 0.58 +0.7 723,305 - GFF1376 0.58 -0.2 723,694 + -0.5 723,694 + -0.1 723,695 - +0.2 723,695 - -0.6 723,695 - -0.6 723,928 + GFF1377 0.15 +0.0 723,928 + GFF1377 0.15 -2.7 723,928 + GFF1377 0.15 +0.4 723,929 - GFF1377 0.15 -2.9 724,332 - GFF1377 0.80 -2.9 724,414 + -0.2 724,415 - +0.9 724,415 - +0.1 724,453 + -1.6 724,454 - -1.0 724,579 + GFF1378 0.27 -0.1 724,580 - GFF1378 0.28 +2.3
Or see this region's nucleotide sequence