Strain Fitness in Variovorax sp. SCN45 around GFF1366

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1364 and GFF1365 are separated by 28 nucleotidesGFF1365 and GFF1366 are separated by 72 nucleotidesGFF1366 and GFF1367 are separated by 94 nucleotides GFF1364 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 706,802 to 708,526 GFF1364 GFF1365 - no description, at 708,555 to 709,079 GFF1365 GFF1366 - Uncharacterized MFS-type transporter, at 709,152 to 710,342 GFF1366 GFF1367 - Transcriptional regulator, LysR family, at 710,437 to 711,399 GFF1367 Position (kb) 709 710 711Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 708.169 kb on - strand, within GFF1364at 708.570 kb on + strandat 708.570 kb on + strandat 708.570 kb on + strandat 708.571 kb on - strandat 708.571 kb on - strandat 708.781 kb on + strand, within GFF1365at 708.781 kb on + strand, within GFF1365at 708.781 kb on + strand, within GFF1365at 708.781 kb on + strand, within GFF1365at 708.782 kb on - strand, within GFF1365at 708.782 kb on - strand, within GFF1365at 708.782 kb on - strand, within GFF1365at 708.788 kb on + strand, within GFF1365at 708.788 kb on + strand, within GFF1365at 708.788 kb on + strand, within GFF1365at 708.789 kb on - strand, within GFF1365at 708.789 kb on - strand, within GFF1365at 708.789 kb on - strand, within GFF1365at 708.800 kb on + strand, within GFF1365at 708.857 kb on - strand, within GFF1365at 708.991 kb on + strand, within GFF1365at 708.991 kb on + strand, within GFF1365at 708.991 kb on + strand, within GFF1365at 708.991 kb on + strand, within GFF1365at 708.992 kb on - strand, within GFF1365at 708.992 kb on - strand, within GFF1365at 708.992 kb on - strand, within GFF1365at 708.992 kb on - strand, within GFF1365at 708.992 kb on - strand, within GFF1365at 708.992 kb on - strand, within GFF1365at 708.992 kb on - strand, within GFF1365at 708.992 kb on - strand, within GFF1365at 708.992 kb on - strand, within GFF1365at 709.091 kb on + strandat 709.091 kb on + strandat 709.091 kb on + strandat 709.092 kb on - strandat 709.092 kb on - strandat 709.127 kb on + strandat 709.678 kb on + strand, within GFF1366at 709.678 kb on + strand, within GFF1366at 709.678 kb on + strand, within GFF1366at 709.678 kb on + strand, within GFF1366at 709.678 kb on + strand, within GFF1366at 709.678 kb on + strand, within GFF1366at 709.678 kb on + strand, within GFF1366at 709.678 kb on + strand, within GFF1366at 709.679 kb on - strand, within GFF1366at 709.679 kb on - strand, within GFF1366at 709.679 kb on - strand, within GFF1366at 709.679 kb on - strand, within GFF1366at 709.679 kb on - strand, within GFF1366at 710.071 kb on + strand, within GFF1366at 710.071 kb on + strand, within GFF1366at 710.352 kb on + strandat 710.353 kb on - strandat 710.394 kb on + strandat 710.647 kb on + strand, within GFF1367at 710.648 kb on - strand, within GFF1367at 710.648 kb on - strand, within GFF1367at 710.959 kb on + strand, within GFF1367at 710.960 kb on - strand, within GFF1367at 711.029 kb on - strand, within GFF1367at 711.172 kb on + strand, within GFF1367at 711.172 kb on + strand, within GFF1367at 711.172 kb on + strand, within GFF1367at 711.172 kb on + strand, within GFF1367at 711.172 kb on + strand, within GFF1367at 711.173 kb on - strand, within GFF1367at 711.173 kb on - strand, within GFF1367at 711.173 kb on - strand, within GFF1367at 711.173 kb on - strand, within GFF1367at 711.179 kb on + strand, within GFF1367at 711.179 kb on + strand, within GFF1367at 711.179 kb on + strand, within GFF1367at 711.179 kb on + strand, within GFF1367at 711.179 kb on + strand, within GFF1367at 711.179 kb on + strand, within GFF1367at 711.179 kb on + strand, within GFF1367at 711.179 kb on + strand, within GFF1367at 711.180 kb on - strand, within GFF1367at 711.180 kb on - strand, within GFF1367at 711.180 kb on - strand, within GFF1367at 711.180 kb on - strand, within GFF1367at 711.180 kb on - strand, within GFF1367at 711.180 kb on - strand, within GFF1367at 711.180 kb on - strand, within GFF1367at 711.180 kb on - strand, within GFF1367at 711.180 kb on - strand, within GFF1367at 711.180 kb on - strand, within GFF1367at 711.262 kb on + strand, within GFF1367at 711.262 kb on + strand, within GFF1367at 711.262 kb on + strand, within GFF1367at 711.262 kb on + strand, within GFF1367at 711.262 kb on + strand, within GFF1367at 711.262 kb on + strand, within GFF1367at 711.262 kb on + strand, within GFF1367at 711.263 kb on - strand, within GFF1367at 711.263 kb on - strand, within GFF1367at 711.263 kb on - strand, within GFF1367at 711.263 kb on - strand, within GFF1367at 711.263 kb on - strand, within GFF1367

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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708,169 - GFF1364 0.79 -0.8
708,570 + +0.2
708,570 + +0.7
708,570 + +0.5
708,571 - +1.0
708,571 - +0.7
708,781 + GFF1365 0.43 -2.8
708,781 + GFF1365 0.43 +2.0
708,781 + GFF1365 0.43 -1.9
708,781 + GFF1365 0.43 +0.3
708,782 - GFF1365 0.43 +1.0
708,782 - GFF1365 0.43 -0.8
708,782 - GFF1365 0.43 +0.2
708,788 + GFF1365 0.44 +0.7
708,788 + GFF1365 0.44 -0.5
708,788 + GFF1365 0.44 -0.8
708,789 - GFF1365 0.45 -0.3
708,789 - GFF1365 0.45 -0.8
708,789 - GFF1365 0.45 -1.1
708,800 + GFF1365 0.47 -0.3
708,857 - GFF1365 0.58 -0.4
708,991 + GFF1365 0.83 +0.7
708,991 + GFF1365 0.83 +0.5
708,991 + GFF1365 0.83 -1.1
708,991 + GFF1365 0.83 -1.6
708,992 - GFF1365 0.83 +0.1
708,992 - GFF1365 0.83 -1.5
708,992 - GFF1365 0.83 +0.3
708,992 - GFF1365 0.83 -0.8
708,992 - GFF1365 0.83 -1.3
708,992 - GFF1365 0.83 -0.5
708,992 - GFF1365 0.83 +1.4
708,992 - GFF1365 0.83 -1.6
708,992 - GFF1365 0.83 -1.3
709,091 + -2.1
709,091 + -1.2
709,091 + +0.5
709,092 - +0.9
709,092 - +0.8
709,127 + +0.3
709,678 + GFF1366 0.44 -0.4
709,678 + GFF1366 0.44 -1.0
709,678 + GFF1366 0.44 -2.3
709,678 + GFF1366 0.44 -0.2
709,678 + GFF1366 0.44 -0.0
709,678 + GFF1366 0.44 +0.2
709,678 + GFF1366 0.44 +0.8
709,678 + GFF1366 0.44 +1.1
709,679 - GFF1366 0.44 -0.8
709,679 - GFF1366 0.44 -0.8
709,679 - GFF1366 0.44 -2.8
709,679 - GFF1366 0.44 -1.1
709,679 - GFF1366 0.44 -1.1
710,071 + GFF1366 0.77 +0.2
710,071 + GFF1366 0.77 -1.8
710,352 + -1.9
710,353 - -1.8
710,394 + -0.2
710,647 + GFF1367 0.22 +0.1
710,648 - GFF1367 0.22 -1.3
710,648 - GFF1367 0.22 +0.2
710,959 + GFF1367 0.54 -0.5
710,960 - GFF1367 0.54 -2.0
711,029 - GFF1367 0.61 +2.3
711,172 + GFF1367 0.76 +1.4
711,172 + GFF1367 0.76 -0.9
711,172 + GFF1367 0.76 -1.3
711,172 + GFF1367 0.76 +0.8
711,172 + GFF1367 0.76 -1.6
711,173 - GFF1367 0.76 -1.9
711,173 - GFF1367 0.76 -0.1
711,173 - GFF1367 0.76 -1.5
711,173 - GFF1367 0.76 -1.5
711,179 + GFF1367 0.77 -1.1
711,179 + GFF1367 0.77 -0.8
711,179 + GFF1367 0.77 +0.2
711,179 + GFF1367 0.77 +0.8
711,179 + GFF1367 0.77 -2.0
711,179 + GFF1367 0.77 -0.2
711,179 + GFF1367 0.77 -2.1
711,179 + GFF1367 0.77 -1.2
711,180 - GFF1367 0.77 +0.4
711,180 - GFF1367 0.77 +0.6
711,180 - GFF1367 0.77 +0.8
711,180 - GFF1367 0.77 +0.3
711,180 - GFF1367 0.77 -0.3
711,180 - GFF1367 0.77 -0.9
711,180 - GFF1367 0.77 +0.8
711,180 - GFF1367 0.77 +0.8
711,180 - GFF1367 0.77 +0.5
711,180 - GFF1367 0.77 +0.5
711,262 + GFF1367 0.86 +1.2
711,262 + GFF1367 0.86 +1.0
711,262 + GFF1367 0.86 +0.3
711,262 + GFF1367 0.86 -0.5
711,262 + GFF1367 0.86 -0.9
711,262 + GFF1367 0.86 -1.6
711,262 + GFF1367 0.86 -0.6
711,263 - GFF1367 0.86 -0.2
711,263 - GFF1367 0.86 +1.4
711,263 - GFF1367 0.86 -1.0
711,263 - GFF1367 0.86 -1.2
711,263 - GFF1367 0.86 -0.2

Or see this region's nucleotide sequence