Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1287 and GFF1288 are separated by 0 nucleotides GFF1288 and GFF1289 are separated by 1 nucleotides GFF1289 and GFF1290 are separated by 19 nucleotides
GFF1287 - Sulfate and thiosulfate binding protein CysP, at 614,293 to 615,309
GFF1287
GFF1288 - Sulfate transport system permease protein CysT, at 615,310 to 616,197
GFF1288
GFF1289 - Sulfate transport system permease protein CysW, at 616,199 to 617,101
GFF1289
GFF1290 - Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25), at 617,121 to 618,218
GFF1290
Position (kb) 615
616
617 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 614.398 kb on + strand, within GFF1287 at 614.398 kb on + strand, within GFF1287 at 614.398 kb on + strand, within GFF1287 at 614.398 kb on + strand, within GFF1287 at 614.420 kb on - strand, within GFF1287 at 614.428 kb on + strand, within GFF1287 at 614.428 kb on + strand, within GFF1287 at 614.429 kb on - strand, within GFF1287 at 614.429 kb on - strand, within GFF1287 at 614.429 kb on - strand, within GFF1287 at 614.452 kb on + strand, within GFF1287 at 614.452 kb on + strand, within GFF1287 at 614.453 kb on - strand, within GFF1287 at 614.453 kb on - strand, within GFF1287 at 614.453 kb on - strand, within GFF1287 at 614.773 kb on + strand, within GFF1287 at 614.773 kb on + strand, within GFF1287 at 614.774 kb on - strand, within GFF1287 at 614.779 kb on + strand, within GFF1287 at 614.780 kb on - strand, within GFF1287 at 614.797 kb on + strand, within GFF1287 at 614.797 kb on + strand, within GFF1287 at 614.797 kb on + strand, within GFF1287 at 614.797 kb on + strand, within GFF1287 at 614.797 kb on + strand, within GFF1287 at 614.797 kb on + strand, within GFF1287 at 614.797 kb on + strand, within GFF1287 at 614.797 kb on + strand, within GFF1287 at 614.798 kb on - strand, within GFF1287 at 614.798 kb on - strand, within GFF1287 at 614.798 kb on - strand, within GFF1287 at 614.798 kb on - strand, within GFF1287 at 614.865 kb on - strand, within GFF1287 at 614.865 kb on - strand, within GFF1287 at 614.961 kb on + strand, within GFF1287 at 614.961 kb on + strand, within GFF1287 at 614.962 kb on - strand, within GFF1287 at 615.091 kb on + strand, within GFF1287 at 615.091 kb on + strand, within GFF1287 at 615.091 kb on + strand, within GFF1287 at 615.091 kb on + strand, within GFF1287 at 615.092 kb on - strand, within GFF1287 at 615.092 kb on - strand, within GFF1287 at 615.092 kb on - strand, within GFF1287 at 615.106 kb on + strand, within GFF1287 at 615.107 kb on - strand, within GFF1287 at 615.107 kb on - strand, within GFF1287 at 615.107 kb on - strand, within GFF1287 at 615.107 kb on - strand, within GFF1287 at 615.107 kb on - strand, within GFF1287 at 615.178 kb on + strand, within GFF1287 at 615.289 kb on + strand at 615.289 kb on + strand at 615.289 kb on + strand at 615.289 kb on + strand at 615.290 kb on - strand at 615.290 kb on - strand at 615.290 kb on - strand at 615.290 kb on - strand at 615.290 kb on - strand at 615.291 kb on + strand at 615.291 kb on + strand at 615.307 kb on + strand at 615.307 kb on + strand at 615.433 kb on + strand, within GFF1288 at 615.545 kb on - strand, within GFF1288 at 615.628 kb on + strand, within GFF1288 at 615.628 kb on + strand, within GFF1288 at 615.629 kb on - strand, within GFF1288 at 615.629 kb on - strand, within GFF1288 at 616.000 kb on + strand, within GFF1288 at 616.084 kb on + strand, within GFF1288 at 616.084 kb on + strand, within GFF1288 at 616.085 kb on - strand, within GFF1288 at 616.090 kb on + strand, within GFF1288 at 616.090 kb on + strand, within GFF1288 at 616.091 kb on - strand, within GFF1288 at 616.365 kb on - strand, within GFF1289 at 616.568 kb on + strand, within GFF1289 at 616.568 kb on + strand, within GFF1289 at 616.568 kb on + strand, within GFF1289 at 616.568 kb on + strand, within GFF1289 at 616.568 kb on + strand, within GFF1289 at 616.568 kb on + strand, within GFF1289 at 616.568 kb on + strand, within GFF1289 at 616.568 kb on + strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.821 kb on - strand, within GFF1289 at 616.821 kb on - strand, within GFF1289 at 616.935 kb on - strand, within GFF1289 at 616.935 kb on - strand, within GFF1289 at 616.943 kb on + strand, within GFF1289 at 616.944 kb on - strand, within GFF1289 at 616.944 kb on - strand, within GFF1289 at 616.944 kb on - strand, within GFF1289
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 614,398 + GFF1287 0.10 -1.8 614,398 + GFF1287 0.10 -1.2 614,398 + GFF1287 0.10 -1.7 614,398 + GFF1287 0.10 -1.2 614,420 - GFF1287 0.12 +1.1 614,428 + GFF1287 0.13 +0.0 614,428 + GFF1287 0.13 -0.8 614,429 - GFF1287 0.13 -1.0 614,429 - GFF1287 0.13 -1.3 614,429 - GFF1287 0.13 -1.3 614,452 + GFF1287 0.16 -1.9 614,452 + GFF1287 0.16 -0.2 614,453 - GFF1287 0.16 -2.2 614,453 - GFF1287 0.16 -2.3 614,453 - GFF1287 0.16 -3.9 614,773 + GFF1287 0.47 -1.3 614,773 + GFF1287 0.47 +0.1 614,774 - GFF1287 0.47 -0.8 614,779 + GFF1287 0.48 -0.7 614,780 - GFF1287 0.48 +1.1 614,797 + GFF1287 0.50 +0.5 614,797 + GFF1287 0.50 +0.7 614,797 + GFF1287 0.50 -1.9 614,797 + GFF1287 0.50 -0.5 614,797 + GFF1287 0.50 -2.6 614,797 + GFF1287 0.50 -0.3 614,797 + GFF1287 0.50 -0.8 614,797 + GFF1287 0.50 -1.0 614,798 - GFF1287 0.50 -2.2 614,798 - GFF1287 0.50 -2.7 614,798 - GFF1287 0.50 -0.8 614,798 - GFF1287 0.50 +0.2 614,865 - GFF1287 0.56 -1.0 614,865 - GFF1287 0.56 -1.4 614,961 + GFF1287 0.66 -1.1 614,961 + GFF1287 0.66 -1.5 614,962 - GFF1287 0.66 +0.9 615,091 + GFF1287 0.78 +1.6 615,091 + GFF1287 0.78 +1.2 615,091 + GFF1287 0.78 -1.1 615,091 + GFF1287 0.78 -3.0 615,092 - GFF1287 0.79 -1.5 615,092 - GFF1287 0.79 -0.4 615,092 - GFF1287 0.79 +0.6 615,106 + GFF1287 0.80 +3.2 615,107 - GFF1287 0.80 -2.3 615,107 - GFF1287 0.80 -1.0 615,107 - GFF1287 0.80 -1.2 615,107 - GFF1287 0.80 -3.1 615,107 - GFF1287 0.80 -1.0 615,178 + GFF1287 0.87 -0.2 615,289 + -1.0 615,289 + -1.4 615,289 + -2.5 615,289 + -0.1 615,290 - -2.0 615,290 - +0.1 615,290 - -1.0 615,290 - -2.8 615,290 - +0.4 615,291 + -1.9 615,291 + -0.8 615,307 + -2.6 615,307 + +3.1 615,433 + GFF1288 0.14 -3.1 615,545 - GFF1288 0.26 -0.5 615,628 + GFF1288 0.36 -2.3 615,628 + GFF1288 0.36 +1.7 615,629 - GFF1288 0.36 -1.6 615,629 - GFF1288 0.36 +1.6 616,000 + GFF1288 0.78 -1.3 616,084 + GFF1288 0.87 -1.9 616,084 + GFF1288 0.87 -3.8 616,085 - GFF1288 0.87 -0.5 616,090 + GFF1288 0.88 -1.4 616,090 + GFF1288 0.88 +1.8 616,091 - GFF1288 0.88 +0.8 616,365 - GFF1289 0.18 +0.2 616,568 + GFF1289 0.41 -1.0 616,568 + GFF1289 0.41 -1.2 616,568 + GFF1289 0.41 +0.4 616,568 + GFF1289 0.41 -1.3 616,568 + GFF1289 0.41 -1.5 616,568 + GFF1289 0.41 -2.3 616,568 + GFF1289 0.41 +1.2 616,568 + GFF1289 0.41 -1.7 616,569 - GFF1289 0.41 -0.5 616,569 - GFF1289 0.41 +0.2 616,569 - GFF1289 0.41 -0.7 616,569 - GFF1289 0.41 -0.4 616,569 - GFF1289 0.41 -1.5 616,569 - GFF1289 0.41 +1.0 616,569 - GFF1289 0.41 -0.1 616,569 - GFF1289 0.41 +0.7 616,569 - GFF1289 0.41 -3.6 616,569 - GFF1289 0.41 -1.5 616,569 - GFF1289 0.41 -0.8 616,569 - GFF1289 0.41 -0.8 616,569 - GFF1289 0.41 -0.9 616,569 - GFF1289 0.41 -0.9 616,569 - GFF1289 0.41 -2.3 616,569 - GFF1289 0.41 +0.2 616,821 - GFF1289 0.69 -0.5 616,821 - GFF1289 0.69 -1.3 616,935 - GFF1289 0.82 -1.0 616,935 - GFF1289 0.82 -0.9 616,943 + GFF1289 0.82 -1.9 616,944 - GFF1289 0.83 -0.0 616,944 - GFF1289 0.83 -1.4 616,944 - GFF1289 0.83 -1.2
Or see this region's nucleotide sequence