Strain Fitness in Variovorax sp. SCN45 around GFF933

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF931 and GFF932 are separated by 10 nucleotidesGFF932 and GFF933 overlap by 7 nucleotidesGFF933 and GFF934 are separated by 37 nucleotides GFF931 - Methylmalonyl-CoA mutase (EC 5.4.99.2) / B12 binding domain of Methylmalonyl-CoA mutase (EC 5.4.99.2), at 243,377 to 245,539 GFF931 GFF932 - Acetyltransferase, GNAT family, at 245,550 to 246,026 GFF932 GFF933 - YgfD: protein that forms a complex with the methylmalonyl-CoA mutase in a pathway for conversion of succinyl-CoA to propionyl-CoA, at 246,020 to 247,069 GFF933 GFF934 - Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3), at 247,107 to 248,651 GFF934 Position (kb) 246 247 248Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 245.060 kb on + strand, within GFF931at 245.060 kb on + strand, within GFF931at 245.060 kb on + strand, within GFF931at 245.060 kb on + strand, within GFF931at 245.060 kb on + strand, within GFF931at 245.060 kb on + strand, within GFF931at 245.061 kb on - strand, within GFF931at 245.061 kb on - strand, within GFF931at 245.072 kb on + strand, within GFF931at 245.429 kb on + strandat 245.430 kb on - strandat 245.442 kb on - strandat 245.465 kb on + strandat 245.465 kb on + strandat 245.465 kb on + strandat 245.466 kb on - strandat 245.466 kb on - strandat 245.466 kb on - strandat 245.715 kb on + strand, within GFF932at 245.715 kb on + strand, within GFF932at 245.715 kb on + strand, within GFF932at 245.715 kb on + strand, within GFF932at 245.716 kb on - strand, within GFF932at 245.716 kb on - strand, within GFF932at 245.716 kb on - strand, within GFF932at 245.716 kb on - strand, within GFF932at 245.716 kb on - strand, within GFF932at 245.716 kb on - strand, within GFF932at 245.716 kb on - strand, within GFF932at 245.808 kb on + strand, within GFF932at 245.808 kb on + strand, within GFF932at 245.809 kb on - strand, within GFF932at 245.937 kb on + strand, within GFF932at 245.985 kb on + strandat 245.985 kb on + strandat 245.985 kb on + strandat 245.985 kb on + strandat 245.986 kb on - strandat 245.986 kb on - strandat 245.988 kb on + strandat 245.988 kb on + strandat 245.988 kb on + strandat 246.377 kb on + strand, within GFF933at 246.377 kb on + strand, within GFF933at 246.378 kb on - strand, within GFF933at 246.381 kb on + strand, within GFF933at 246.381 kb on + strand, within GFF933at 246.381 kb on + strand, within GFF933at 246.381 kb on + strand, within GFF933at 246.382 kb on - strand, within GFF933at 246.382 kb on - strand, within GFF933at 246.382 kb on - strand, within GFF933at 246.382 kb on - strand, within GFF933at 246.382 kb on - strand, within GFF933at 247.338 kb on + strand, within GFF934at 247.624 kb on - strand, within GFF934at 247.671 kb on + strand, within GFF934at 247.671 kb on + strand, within GFF934at 247.671 kb on + strand, within GFF934at 247.671 kb on + strand, within GFF934at 247.671 kb on + strand, within GFF934at 247.671 kb on + strand, within GFF934at 247.671 kb on + strand, within GFF934at 247.672 kb on - strand, within GFF934at 247.672 kb on - strand, within GFF934at 247.672 kb on - strand, within GFF934at 247.672 kb on - strand, within GFF934at 247.672 kb on - strand, within GFF934at 247.672 kb on - strand, within GFF934at 247.672 kb on - strand, within GFF934at 247.672 kb on - strand, within GFF934at 247.672 kb on - strand, within GFF934at 247.672 kb on - strand, within GFF934at 247.672 kb on - strand, within GFF934at 247.672 kb on - strand, within GFF934at 247.830 kb on + strand, within GFF934at 247.831 kb on - strand, within GFF934at 247.831 kb on - strand, within GFF934at 247.836 kb on + strand, within GFF934at 247.837 kb on - strand, within GFF934at 247.837 kb on - strand, within GFF934at 247.837 kb on - strand, within GFF934at 247.837 kb on - strand, within GFF934at 247.918 kb on - strand, within GFF934at 247.960 kb on - strand, within GFF934at 247.960 kb on - strand, within GFF934at 248.026 kb on - strand, within GFF934

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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245,060 + GFF931 0.78 -1.6
245,060 + GFF931 0.78 -2.3
245,060 + GFF931 0.78 -0.6
245,060 + GFF931 0.78 -2.2
245,060 + GFF931 0.78 -3.1
245,060 + GFF931 0.78 +0.4
245,061 - GFF931 0.78 -2.5
245,061 - GFF931 0.78 -1.5
245,072 + GFF931 0.78 -2.0
245,429 + +0.5
245,430 - -1.6
245,442 - -2.9
245,465 + +0.3
245,465 + +0.4
245,465 + -0.9
245,466 - -1.7
245,466 - -0.9
245,466 - -4.1
245,715 + GFF932 0.35 -1.6
245,715 + GFF932 0.35 +0.4
245,715 + GFF932 0.35 -0.0
245,715 + GFF932 0.35 -1.6
245,716 - GFF932 0.35 -0.1
245,716 - GFF932 0.35 -1.5
245,716 - GFF932 0.35 -0.6
245,716 - GFF932 0.35 -1.9
245,716 - GFF932 0.35 -1.2
245,716 - GFF932 0.35 -1.2
245,716 - GFF932 0.35 -1.0
245,808 + GFF932 0.54 +1.1
245,808 + GFF932 0.54 +1.7
245,809 - GFF932 0.54 +0.8
245,937 + GFF932 0.81 -0.0
245,985 + -1.6
245,985 + +0.5
245,985 + -1.6
245,985 + +1.5
245,986 - -1.7
245,986 - -1.2
245,988 + -1.9
245,988 + -0.6
245,988 + -2.6
246,377 + GFF933 0.34 -0.4
246,377 + GFF933 0.34 +0.7
246,378 - GFF933 0.34 +0.9
246,381 + GFF933 0.34 -2.2
246,381 + GFF933 0.34 -1.2
246,381 + GFF933 0.34 -1.3
246,381 + GFF933 0.34 -0.9
246,382 - GFF933 0.34 -1.5
246,382 - GFF933 0.34 -0.9
246,382 - GFF933 0.34 +2.8
246,382 - GFF933 0.34 -0.9
246,382 - GFF933 0.34 +0.1
247,338 + GFF934 0.15 -2.3
247,624 - GFF934 0.33 -2.8
247,671 + GFF934 0.37 -1.8
247,671 + GFF934 0.37 -3.3
247,671 + GFF934 0.37 -1.6
247,671 + GFF934 0.37 -4.8
247,671 + GFF934 0.37 -0.9
247,671 + GFF934 0.37 -2.2
247,671 + GFF934 0.37 -1.1
247,672 - GFF934 0.37 -1.2
247,672 - GFF934 0.37 -1.4
247,672 - GFF934 0.37 -2.1
247,672 - GFF934 0.37 -1.8
247,672 - GFF934 0.37 -2.5
247,672 - GFF934 0.37 -0.6
247,672 - GFF934 0.37 +1.9
247,672 - GFF934 0.37 -3.6
247,672 - GFF934 0.37 -3.2
247,672 - GFF934 0.37 -0.4
247,672 - GFF934 0.37 -2.1
247,672 - GFF934 0.37 -1.9
247,830 + GFF934 0.47 -3.2
247,831 - GFF934 0.47 -3.9
247,831 - GFF934 0.47 -4.3
247,836 + GFF934 0.47 -1.6
247,837 - GFF934 0.47 -3.2
247,837 - GFF934 0.47 -1.9
247,837 - GFF934 0.47 -2.6
247,837 - GFF934 0.47 -2.6
247,918 - GFF934 0.52 -2.1
247,960 - GFF934 0.55 -4.7
247,960 - GFF934 0.55 -3.0
248,026 - GFF934 0.59 -2.8

Or see this region's nucleotide sequence