Strain Fitness in Variovorax sp. SCN45 around GFF74

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
90,134	-		GFF72	0.78	+1.8
90,495	+		GFF73	0.17	+0.7
90,496	-		GFF73	0.18	-1.2
90,496	-		GFF73	0.18	-1.7
90,534	+		GFF73	0.23	+0.2
90,535	-		GFF73	0.23	-1.3
90,621	+		GFF73	0.37	+0.6
90,621	+		GFF73	0.37	-1.0
90,873	+		GFF73	0.75	+0.8
90,873	+		GFF73	0.75	+3.4
90,873	+		GFF73	0.75	-1.1
90,873	+		GFF73	0.75	+0.4
90,873	+		GFF73	0.75	+1.2
90,874	-		GFF73	0.75	-2.3
90,874	-		GFF73	0.75	+0.8
90,874	-		GFF73	0.75	+0.2
90,874	-		GFF73	0.75	-0.8
90,889	-		GFF73	0.77	+0.7
90,903	+		GFF73	0.79	-0.3
91,052	+				+1.6
91,052	+				-1.0
91,052	+				+0.8
91,053	-				-1.9
91,053	-				-0.2
91,099	+				+0.7
91,428	-		GFF74	0.34	-3.6
91,619	+		GFF74	0.55	-3.6
91,620	-		GFF74	0.55	-0.2
91,620	-		GFF74	0.55	-1.1
91,799	+		GFF74	0.74	+0.4
91,799	+		GFF74	0.74	-3.6
91,799	+		GFF74	0.74	-1.2
91,800	-		GFF74	0.74	+0.9
91,800	-		GFF74	0.74	+3.0
91,800	-		GFF74	0.74	+0.9
91,800	-		GFF74	0.74	-1.2
91,978	+				-0.3
91,978	+				-0.4
92,048	+				-0.5
92,064	+				+1.2
92,622	+		GFF75	0.47	-2.1
92,622	+		GFF75	0.47	-1.0
92,623	-		GFF75	0.47	+0.8
92,623	-		GFF75	0.47	+0.3
92,925	+		GFF75	0.76	-1.3
92,926	-		GFF75	0.76	+0.5
92,926	-		GFF75	0.76	+0.2
92,926	-		GFF75	0.76	-2.0
92,926	-		GFF75	0.76	-0.7
92,926	-		GFF75	0.76	-2.2
92,970	+		GFF75	0.81	+1.1
92,970	+		GFF75	0.81	-0.1
92,971	-		GFF75	0.81	-3.8
93,024	+		GFF75	0.86	-3.8
93,024	+		GFF75	0.86	+1.0
93,024	+		GFF75	0.86	-2.7
93,025	-		GFF75	0.86	-0.8
93,025	-		GFF75	0.86	+0.2