Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7344 and GFF7345 are separated by 137 nucleotides GFF7345 and GFF7346 overlap by 4 nucleotides GFF7346 and GFF7347 are separated by 3 nucleotides
GFF7344 - Transcriptional regulator, LysR family, at 12,232 to 13,221
GFF7344
GFF7345 - Periplasmic aromatic aldehyde oxidoreductase, iron-sulfur subunit YagT, at 13,359 to 14,015
GFF7345
GFF7346 - Periplasmic aromatic aldehyde oxidoreductase, FAD binding subunit YagS, at 14,012 to 14,962
GFF7346
GFF7347 - Periplasmic aromatic aldehyde oxidoreductase, molybdenum binding subunit YagR, at 14,966 to 17,161
GFF7347
Position (kb)
14
15 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 13.354 kb on + strand at 13.354 kb on + strand at 13.354 kb on + strand at 13.355 kb on - strand at 13.876 kb on - strand, within GFF7345 at 13.953 kb on + strand at 13.953 kb on + strand at 14.373 kb on - strand, within GFF7346 at 14.693 kb on + strand, within GFF7346 at 14.703 kb on + strand, within GFF7346 at 14.703 kb on + strand, within GFF7346 at 14.704 kb on - strand, within GFF7346 at 14.704 kb on - strand, within GFF7346 at 15.074 kb on + strand at 15.365 kb on + strand, within GFF7347 at 15.497 kb on + strand, within GFF7347 at 15.497 kb on + strand, within GFF7347 at 15.498 kb on - strand, within GFF7347 at 15.502 kb on + strand, within GFF7347
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 13,354 + +0.9 13,354 + +1.3 13,354 + -0.3 13,355 - +1.4 13,876 - GFF7345 0.79 -0.1 13,953 + +0.7 13,953 + -0.9 14,373 - GFF7346 0.38 -2.2 14,693 + GFF7346 0.72 -3.1 14,703 + GFF7346 0.73 -0.3 14,703 + GFF7346 0.73 -1.7 14,704 - GFF7346 0.73 -0.9 14,704 - GFF7346 0.73 +1.1 15,074 + -2.3 15,365 + GFF7347 0.18 -0.1 15,497 + GFF7347 0.24 -0.5 15,497 + GFF7347 0.24 +0.4 15,498 - GFF7347 0.24 -0.2 15,502 + GFF7347 0.24 +1.9
Or see this region's nucleotide sequence