Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7338 and GFF7339 overlap by 4 nucleotides GFF7339 and GFF7340 are separated by 4 nucleotides GFF7340 and GFF7341 are separated by 207 nucleotides GFF7341 and GFF7342 overlap by 4 nucleotides
GFF7338 - ABC transporter, permease protein (cluster 10, nitrate/sulfonate/bicarbonate), at 7,130 to 7,957
GFF7338
GFF7339 - ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 7,954 to 8,781
GFF7339
GFF7340 - ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 8,786 to 9,877
GFF7340
GFF7341 - no description, at 10,085 to 10,207
GFF7341
GFF7342 - Oxidoreductase, at 10,204 to 11,664
GFF7342
Position (kb) 8
9
10 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 7.947 kb on - strand at 8.174 kb on + strand, within GFF7339 at 8.175 kb on - strand, within GFF7339 at 8.742 kb on - strand at 8.847 kb on + strand at 8.864 kb on + strand at 8.864 kb on + strand at 8.910 kb on + strand, within GFF7340 at 8.911 kb on - strand, within GFF7340 at 9.322 kb on - strand, within GFF7340 at 9.322 kb on - strand, within GFF7340 at 9.427 kb on - strand, within GFF7340 at 9.427 kb on - strand, within GFF7340 at 9.594 kb on + strand, within GFF7340 at 9.625 kb on - strand, within GFF7340 at 9.625 kb on - strand, within GFF7340 at 9.842 kb on - strand at 9.975 kb on + strand at 9.976 kb on - strand at 9.976 kb on - strand at 10.042 kb on + strand at 10.043 kb on - strand at 10.525 kb on + strand, within GFF7342 at 10.552 kb on + strand, within GFF7342 at 10.553 kb on - strand, within GFF7342
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 7,947 - -3.0 8,174 + GFF7339 0.27 +0.5 8,175 - GFF7339 0.27 -0.2 8,742 - +0.1 8,847 + -0.4 8,864 + -2.3 8,864 + -1.0 8,910 + GFF7340 0.11 +1.5 8,911 - GFF7340 0.11 +0.1 9,322 - GFF7340 0.49 +1.1 9,322 - GFF7340 0.49 -1.4 9,427 - GFF7340 0.59 -2.0 9,427 - GFF7340 0.59 -1.7 9,594 + GFF7340 0.74 +0.2 9,625 - GFF7340 0.77 +0.3 9,625 - GFF7340 0.77 +0.0 9,842 - -0.1 9,975 + -2.1 9,976 - -1.0 9,976 - +0.1 10,042 + -0.3 10,043 - +1.1 10,525 + GFF7342 0.22 +0.9 10,552 + GFF7342 0.24 +0.9 10,553 - GFF7342 0.24 +0.1
Or see this region's nucleotide sequence