Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF730 and GFF731 are separated by 185 nucleotides GFF731 and GFF732 are separated by 35 nucleotides GFF732 and GFF733 are separated by 332 nucleotides
GFF730 - Class A beta-lactamase (EC 3.5.2.6), at 787,834 to 788,724
GFF730
GFF731 - Transcriptional regulator, ArsR family, at 788,910 to 789,251
GFF731
GFF732 - Ligand-binding SRPBCC domain protein family, at 789,287 to 789,829
GFF732
GFF733 - no description, at 790,162 to 790,422
GFF733
Position (kb) 788
789
790 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 787.922 kb on + strand at 787.923 kb on - strand, within GFF730 at 787.977 kb on + strand, within GFF730 at 787.978 kb on - strand, within GFF730 at 787.989 kb on - strand, within GFF730 at 787.989 kb on - strand, within GFF730 at 787.989 kb on - strand, within GFF730 at 788.418 kb on - strand, within GFF730 at 788.782 kb on - strand at 788.897 kb on + strand at 788.921 kb on - strand at 788.944 kb on + strand at 789.174 kb on + strand, within GFF731 at 789.175 kb on - strand, within GFF731 at 789.175 kb on - strand, within GFF731 at 789.177 kb on + strand, within GFF731 at 789.177 kb on + strand, within GFF731 at 789.178 kb on - strand, within GFF731 at 789.250 kb on - strand at 789.250 kb on - strand at 789.386 kb on + strand, within GFF732 at 789.929 kb on + strand at 789.997 kb on + strand at 789.997 kb on + strand at 789.998 kb on - strand at 789.998 kb on - strand at 789.998 kb on - strand at 789.998 kb on - strand at 790.078 kb on - strand at 790.144 kb on + strand at 790.179 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 787,922 + +0.2 787,923 - GFF730 0.10 -0.1 787,977 + GFF730 0.16 -3.3 787,978 - GFF730 0.16 -0.8 787,989 - GFF730 0.17 -1.1 787,989 - GFF730 0.17 +1.8 787,989 - GFF730 0.17 -0.5 788,418 - GFF730 0.66 -4.2 788,782 - -2.8 788,897 + -0.2 788,921 - -1.2 788,944 + +0.7 789,174 + GFF731 0.77 -3.1 789,175 - GFF731 0.77 -1.6 789,175 - GFF731 0.77 -0.4 789,177 + GFF731 0.78 -1.4 789,177 + GFF731 0.78 -1.2 789,178 - GFF731 0.78 -1.2 789,250 - -1.8 789,250 - -0.2 789,386 + GFF732 0.18 +0.4 789,929 + -0.1 789,997 + -0.2 789,997 + -2.1 789,998 - -0.2 789,998 - -1.2 789,998 - -1.4 789,998 - +0.8 790,078 - +0.2 790,144 + +0.1 790,179 - +0.8
Or see this region's nucleotide sequence