Strain Fitness in Variovorax sp. SCN45 around GFF7228

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
8,144	+		GFF7226	0.77	+0.2
8,144	+		GFF7226	0.77	-2.4
8,144	+		GFF7226	0.77	-1.2
8,145	-		GFF7226	0.77	+0.4
8,145	-		GFF7226	0.77	+3.0
8,145	-		GFF7226	0.77	+0.6
8,638	+				+0.0
8,639	-				+1.2
8,703	+				-2.3
8,704	-				-1.4
8,875	+				-1.0
8,875	+				-2.5
8,876	-				-0.5
9,127	+		GFF7228	0.18	-0.8
9,127	+		GFF7228	0.18	-0.1
9,128	-		GFF7228	0.18	-1.0
9,128	-		GFF7228	0.18	-1.7
9,537	-		GFF7228	0.40	-0.4
9,538	+		GFF7228	0.41	-0.8
9,539	-		GFF7228	0.41	-0.2
10,078	+		GFF7228	0.70	-1.0
10,079	-		GFF7228	0.70	-1.5
10,291	+		GFF7228	0.81	-0.6
10,292	-		GFF7228	0.81	-3.6
10,427	-		GFF7228	0.89	-3.5
10,478	-				-0.8
10,498	+				-1.5
10,498	+				-3.4
10,498	+				-1.2
10,498	+				-1.1
10,498	+				-1.3
10,498	+				-0.6
10,498	+				-0.1
10,498	+				+2.0
10,499	-				-3.5
10,499	-				+1.5
10,540	+				-0.2
10,541	-				+1.3
10,743	+				-0.6
10,743	+				+0.6
10,743	+				-2.5
10,744	-				-0.7