Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7211 and GFF7212 are separated by 215 nucleotides GFF7212 and GFF7213 are separated by 12 nucleotides
GFF7211 - Nitrilotriacetate monooxygenase component A (EC 1.14.13.-), at 27,181 to 28,599
GFF7211
GFF7212 - Nitrilotriacetate monooxygenase [FMNH2], at 28,815 to 30,170
GFF7212
GFF7213 - DNA polymerase II (EC 2.7.7.7), at 30,183 to 32,597
GFF7213
Position (kb) 28
29
30
31 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 27.828 kb on - strand, within GFF7211 at 28.271 kb on + strand, within GFF7211 at 28.311 kb on + strand, within GFF7211 at 28.311 kb on + strand, within GFF7211 at 28.376 kb on + strand, within GFF7211 at 28.376 kb on + strand, within GFF7211 at 28.376 kb on + strand, within GFF7211 at 28.377 kb on - strand, within GFF7211 at 28.377 kb on - strand, within GFF7211 at 28.526 kb on + strand at 28.544 kb on + strand at 28.682 kb on + strand at 28.724 kb on - strand at 28.782 kb on + strand at 28.782 kb on + strand at 28.932 kb on + strand at 28.932 kb on + strand at 29.884 kb on - strand, within GFF7212 at 30.388 kb on - strand at 30.400 kb on + strand at 30.401 kb on - strand at 30.401 kb on - strand at 30.551 kb on - strand, within GFF7213 at 30.643 kb on + strand, within GFF7213 at 30.913 kb on + strand, within GFF7213 at 30.914 kb on - strand, within GFF7213 at 30.914 kb on - strand, within GFF7213
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 27,828 - GFF7211 0.46 +0.6 28,271 + GFF7211 0.77 +0.3 28,311 + GFF7211 0.80 -0.5 28,311 + GFF7211 0.80 -1.5 28,376 + GFF7211 0.84 -2.1 28,376 + GFF7211 0.84 -0.5 28,376 + GFF7211 0.84 +0.7 28,377 - GFF7211 0.84 -0.7 28,377 - GFF7211 0.84 -0.2 28,526 + -1.7 28,544 + -0.6 28,682 + -2.0 28,724 - +1.5 28,782 + -0.6 28,782 + -3.4 28,932 + -1.4 28,932 + +0.1 29,884 - GFF7212 0.79 +0.6 30,388 - -0.8 30,400 + -3.3 30,401 - -2.1 30,401 - -3.2 30,551 - GFF7213 0.15 -3.0 30,643 + GFF7213 0.19 +0.6 30,913 + GFF7213 0.30 +0.0 30,914 - GFF7213 0.30 +1.3 30,914 - GFF7213 0.30 -0.0
Or see this region's nucleotide sequence