Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7195 and GFF7196 overlap by 4 nucleotides GFF7196 and GFF7197 are separated by 10 nucleotides GFF7197 and GFF7198 are separated by 97 nucleotides
GFF7195 - Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1), at 13,161 to 14,174
GFF7195
GFF7196 - Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-), at 14,171 to 15,022
GFF7196
GFF7197 - KEGG: peptide/nickel transport system ATP-binding protein, at 15,033 to 15,869
GFF7197
GFF7198 - Predicted metal-dependent hydrolase of the TIM-barrel fold, at 15,967 to 17,484
GFF7198
Position (kb) 14
15
16 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 13.532 kb on - strand, within GFF7195 at 13.923 kb on + strand, within GFF7195 at 14.573 kb on + strand, within GFF7196 at 14.666 kb on + strand, within GFF7196 at 14.666 kb on + strand, within GFF7196 at 14.667 kb on - strand, within GFF7196 at 14.867 kb on + strand, within GFF7196 at 14.868 kb on - strand, within GFF7196 at 14.868 kb on - strand, within GFF7196 at 14.891 kb on + strand, within GFF7196 at 14.892 kb on - strand, within GFF7196 at 14.892 kb on - strand, within GFF7196 at 15.804 kb on + strand at 15.805 kb on - strand at 15.883 kb on + strand at 15.928 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 13,532 - GFF7195 0.37 -0.7 13,923 + GFF7195 0.75 -2.4 14,573 + GFF7196 0.47 -1.4 14,666 + GFF7196 0.58 +2.9 14,666 + GFF7196 0.58 +0.1 14,667 - GFF7196 0.58 -0.9 14,867 + GFF7196 0.82 -0.1 14,868 - GFF7196 0.82 +1.1 14,868 - GFF7196 0.82 +0.6 14,891 + GFF7196 0.85 -1.5 14,892 - GFF7196 0.85 +2.1 14,892 - GFF7196 0.85 -0.5 15,804 + -0.2 15,805 - -0.5 15,883 + -2.4 15,928 + +0.1
Or see this region's nucleotide sequence