Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7182 and GFF7183 are separated by 234 nucleotides GFF7183 and GFF7184 are separated by 399 nucleotides
GFF7182 - no description, at 162 to 626
GFF7182
GFF7183 - hypothetical protein, at 861 to 1,529
GFF7183
GFF7184 - hypothetical protein, at 1,929 to 2,477
GFF7184
Position (kb) 0
1
2 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 0.058 kb on + strand at 0.074 kb on + strand at 0.108 kb on + strand at 0.109 kb on - strand at 0.113 kb on - strand at 0.194 kb on + strand at 0.207 kb on + strand at 0.256 kb on + strand, within GFF7182 at 0.350 kb on - strand, within GFF7182 at 0.416 kb on + strand, within GFF7182 at 0.417 kb on - strand, within GFF7182 at 0.420 kb on + strand, within GFF7182 at 0.421 kb on - strand, within GFF7182 at 0.421 kb on - strand, within GFF7182 at 0.529 kb on - strand, within GFF7182 at 0.529 kb on - strand, within GFF7182 at 0.903 kb on - strand at 0.911 kb on + strand at 0.911 kb on + strand at 0.940 kb on - strand, within GFF7183 at 1.027 kb on - strand, within GFF7183 at 1.036 kb on - strand, within GFF7183 at 1.077 kb on + strand, within GFF7183 at 1.078 kb on - strand, within GFF7183 at 1.078 kb on - strand, within GFF7183 at 1.086 kb on + strand, within GFF7183 at 1.221 kb on + strand, within GFF7183 at 1.524 kb on - strand at 1.524 kb on - strand at 1.768 kb on - strand at 1.804 kb on - strand at 1.804 kb on - strand at 1.804 kb on - strand at 1.978 kb on - strand at 1.988 kb on + strand, within GFF7184 at 1.989 kb on - strand, within GFF7184 at 2.118 kb on + strand, within GFF7184 at 2.225 kb on - strand, within GFF7184 at 2.225 kb on - strand, within GFF7184
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 58 + +0.5 74 + -0.2 108 + -3.0 109 - -1.0 113 - +0.8 194 + -3.1 207 + +1.1 256 + GFF7182 0.20 +0.6 350 - GFF7182 0.40 +0.5 416 + GFF7182 0.55 -1.6 417 - GFF7182 0.55 -1.2 420 + GFF7182 0.55 -0.2 421 - GFF7182 0.56 -2.5 421 - GFF7182 0.56 +0.6 529 - GFF7182 0.79 -1.4 529 - GFF7182 0.79 -2.2 903 - -2.3 911 + -3.8 911 + +1.1 940 - GFF7183 0.12 -0.6 1,027 - GFF7183 0.25 -1.9 1,036 - GFF7183 0.26 -0.1 1,077 + GFF7183 0.32 -1.1 1,078 - GFF7183 0.32 -0.5 1,078 - GFF7183 0.32 -2.0 1,086 + GFF7183 0.34 -3.9 1,221 + GFF7183 0.54 -2.6 1,524 - +0.1 1,524 - -2.4 1,768 - -2.4 1,804 - -2.5 1,804 - -0.2 1,804 - -0.7 1,978 - -0.0 1,988 + GFF7184 0.11 -0.9 1,989 - GFF7184 0.11 -1.4 2,118 + GFF7184 0.34 -0.9 2,225 - GFF7184 0.54 -1.5 2,225 - GFF7184 0.54 -1.0
Or see this region's nucleotide sequence