Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7132 and GFF7133 are separated by 5 nucleotides GFF7133 and GFF7134 are separated by 85 nucleotides
GFF7132 - Xylose isomerase-like TIM-barrel protein KPN_00539, at 3 to 761
GFF7132
GFF7133 - Catalase-like heme-binding protein, at 767 to 1,852
GFF7133
GFF7134 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 1,938 to 3,395
GFF7134
Position (kb) 0
1
2 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 0.047 kb on + strand at 0.047 kb on + strand at 0.047 kb on + strand at 0.047 kb on + strand at 0.055 kb on + strand at 0.141 kb on + strand, within GFF7132 at 0.141 kb on + strand, within GFF7132 at 0.142 kb on - strand, within GFF7132 at 0.142 kb on - strand, within GFF7132 at 0.142 kb on - strand, within GFF7132 at 0.142 kb on - strand, within GFF7132 at 0.147 kb on + strand, within GFF7132 at 0.147 kb on + strand, within GFF7132 at 0.147 kb on + strand, within GFF7132 at 0.147 kb on + strand, within GFF7132 at 0.147 kb on + strand, within GFF7132 at 0.147 kb on + strand, within GFF7132 at 0.147 kb on + strand, within GFF7132 at 0.147 kb on + strand, within GFF7132 at 0.148 kb on - strand, within GFF7132 at 0.148 kb on - strand, within GFF7132 at 0.148 kb on - strand, within GFF7132 at 0.259 kb on - strand, within GFF7132 at 0.300 kb on + strand, within GFF7132 at 0.300 kb on + strand, within GFF7132 at 0.300 kb on + strand, within GFF7132 at 0.300 kb on + strand, within GFF7132 at 0.300 kb on + strand, within GFF7132 at 0.300 kb on + strand, within GFF7132 at 0.300 kb on + strand, within GFF7132 at 0.300 kb on + strand, within GFF7132 at 0.300 kb on + strand, within GFF7132 at 0.300 kb on + strand, within GFF7132 at 0.300 kb on + strand, within GFF7132 at 0.301 kb on - strand, within GFF7132 at 0.301 kb on - strand, within GFF7132 at 0.301 kb on - strand, within GFF7132 at 0.301 kb on - strand, within GFF7132 at 0.301 kb on - strand, within GFF7132 at 0.301 kb on - strand, within GFF7132 at 0.301 kb on - strand, within GFF7132 at 0.301 kb on - strand, within GFF7132 at 0.351 kb on + strand, within GFF7132 at 0.351 kb on + strand, within GFF7132 at 0.352 kb on - strand, within GFF7132 at 0.352 kb on - strand, within GFF7132 at 0.352 kb on - strand, within GFF7132 at 0.387 kb on + strand, within GFF7132 at 0.387 kb on + strand, within GFF7132 at 0.388 kb on - strand, within GFF7132 at 0.388 kb on - strand, within GFF7132 at 0.388 kb on - strand, within GFF7132 at 0.388 kb on - strand, within GFF7132 at 0.388 kb on - strand, within GFF7132 at 0.396 kb on + strand, within GFF7132 at 0.396 kb on + strand, within GFF7132 at 0.396 kb on + strand, within GFF7132 at 0.396 kb on + strand, within GFF7132 at 0.396 kb on + strand, within GFF7132 at 0.396 kb on + strand, within GFF7132 at 0.396 kb on + strand, within GFF7132 at 0.397 kb on - strand, within GFF7132 at 0.397 kb on - strand, within GFF7132 at 0.397 kb on - strand, within GFF7132 at 0.397 kb on - strand, within GFF7132 at 0.397 kb on - strand, within GFF7132 at 0.397 kb on - strand, within GFF7132 at 0.408 kb on + strand, within GFF7132 at 0.408 kb on + strand, within GFF7132 at 0.408 kb on + strand, within GFF7132 at 0.408 kb on + strand, within GFF7132 at 0.409 kb on - strand, within GFF7132 at 0.409 kb on - strand, within GFF7132 at 0.409 kb on - strand, within GFF7132 at 0.409 kb on - strand, within GFF7132 at 0.477 kb on + strand, within GFF7132 at 0.477 kb on + strand, within GFF7132 at 0.478 kb on - strand, within GFF7132 at 0.478 kb on - strand, within GFF7132 at 0.478 kb on - strand, within GFF7132 at 0.478 kb on - strand, within GFF7132 at 0.576 kb on + strand, within GFF7132 at 0.576 kb on + strand, within GFF7132 at 0.576 kb on + strand, within GFF7132 at 0.577 kb on - strand, within GFF7132 at 0.577 kb on - strand, within GFF7132 at 0.577 kb on - strand, within GFF7132 at 0.804 kb on + strand at 0.805 kb on - strand at 0.822 kb on + strand at 0.822 kb on + strand at 0.822 kb on + strand at 0.822 kb on + strand at 0.822 kb on + strand at 0.822 kb on + strand at 0.822 kb on + strand at 0.822 kb on + strand at 0.822 kb on + strand at 0.823 kb on - strand at 0.823 kb on - strand at 0.823 kb on - strand at 0.823 kb on - strand at 1.197 kb on + strand, within GFF7133 at 1.197 kb on + strand, within GFF7133 at 1.198 kb on - strand, within GFF7133 at 1.198 kb on - strand, within GFF7133 at 1.198 kb on - strand, within GFF7133 at 1.198 kb on - strand, within GFF7133 at 1.198 kb on - strand, within GFF7133 at 1.198 kb on - strand, within GFF7133 at 1.198 kb on - strand, within GFF7133 at 1.198 kb on - strand, within GFF7133 at 1.206 kb on + strand, within GFF7133 at 1.888 kb on + strand at 1.888 kb on + strand at 1.888 kb on + strand at 1.889 kb on - strand at 1.889 kb on - strand at 1.889 kb on - strand at 1.919 kb on + strand at 1.919 kb on + strand at 1.919 kb on + strand at 1.919 kb on + strand at 1.919 kb on + strand at 1.919 kb on + strand at 1.919 kb on + strand at 1.919 kb on + strand at 1.920 kb on - strand at 1.920 kb on - strand at 1.920 kb on - strand at 1.920 kb on - strand at 1.920 kb on - strand at 2.230 kb on + strand, within GFF7134 at 2.230 kb on + strand, within GFF7134 at 2.230 kb on + strand, within GFF7134 at 2.231 kb on - strand, within GFF7134 at 2.231 kb on - strand, within GFF7134 at 2.231 kb on - strand, within GFF7134 at 2.231 kb on - strand, within GFF7134 at 2.231 kb on - strand, within GFF7134 at 2.343 kb on + strand, within GFF7134 at 2.343 kb on + strand, within GFF7134 at 2.343 kb on + strand, within GFF7134 at 2.343 kb on + strand, within GFF7134 at 2.344 kb on - strand, within GFF7134 at 2.344 kb on - strand, within GFF7134 at 2.344 kb on - strand, within GFF7134 at 2.428 kb on + strand, within GFF7134 at 2.428 kb on + strand, within GFF7134 at 2.428 kb on + strand, within GFF7134 at 2.428 kb on + strand, within GFF7134 at 2.429 kb on - strand, within GFF7134 at 2.429 kb on - strand, within GFF7134 at 2.429 kb on - strand, within GFF7134 at 2.429 kb on - strand, within GFF7134 at 2.429 kb on - strand, within GFF7134 at 2.429 kb on - strand, within GFF7134 at 2.429 kb on - strand, within GFF7134 at 2.503 kb on + strand, within GFF7134 at 2.503 kb on + strand, within GFF7134 at 2.503 kb on + strand, within GFF7134 at 2.503 kb on + strand, within GFF7134 at 2.504 kb on - strand, within GFF7134 at 2.504 kb on - strand, within GFF7134 at 2.504 kb on - strand, within GFF7134 at 2.504 kb on - strand, within GFF7134 at 2.504 kb on - strand, within GFF7134 at 2.504 kb on - strand, within GFF7134 at 2.504 kb on - strand, within GFF7134 at 2.504 kb on - strand, within GFF7134 at 2.725 kb on + strand, within GFF7134 at 2.725 kb on + strand, within GFF7134 at 2.725 kb on + strand, within GFF7134 at 2.725 kb on + strand, within GFF7134 at 2.725 kb on + strand, within GFF7134 at 2.725 kb on + strand, within GFF7134 at 2.726 kb on - strand, within GFF7134 at 2.726 kb on - strand, within GFF7134 at 2.726 kb on - strand, within GFF7134 at 2.726 kb on - strand, within GFF7134
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 47 + -0.1 47 + -0.3 47 + +0.6 47 + -0.6 55 + -0.0 141 + GFF7132 0.18 -1.5 141 + GFF7132 0.18 -0.5 142 - GFF7132 0.18 -1.0 142 - GFF7132 0.18 +1.4 142 - GFF7132 0.18 -1.2 142 - GFF7132 0.18 -1.7 147 + GFF7132 0.19 +1.0 147 + GFF7132 0.19 +0.2 147 + GFF7132 0.19 -1.3 147 + GFF7132 0.19 +1.1 147 + GFF7132 0.19 -2.2 147 + GFF7132 0.19 +1.2 147 + GFF7132 0.19 -0.3 147 + GFF7132 0.19 -0.9 148 - GFF7132 0.19 +3.3 148 - GFF7132 0.19 +0.1 148 - GFF7132 0.19 -0.1 259 - GFF7132 0.34 -0.1 300 + GFF7132 0.39 -0.8 300 + GFF7132 0.39 -0.2 300 + GFF7132 0.39 +1.2 300 + GFF7132 0.39 -1.0 300 + GFF7132 0.39 +0.2 300 + GFF7132 0.39 +2.6 300 + GFF7132 0.39 +1.8 300 + GFF7132 0.39 -1.9 300 + GFF7132 0.39 -1.7 300 + GFF7132 0.39 -2.0 300 + GFF7132 0.39 -1.9 301 - GFF7132 0.39 -0.5 301 - GFF7132 0.39 -1.7 301 - GFF7132 0.39 -0.8 301 - GFF7132 0.39 -0.0 301 - GFF7132 0.39 -0.3 301 - GFF7132 0.39 +2.4 301 - GFF7132 0.39 -2.4 301 - GFF7132 0.39 -3.6 351 + GFF7132 0.46 +1.0 351 + GFF7132 0.46 -1.7 352 - GFF7132 0.46 -0.9 352 - GFF7132 0.46 +0.8 352 - GFF7132 0.46 -3.1 387 + GFF7132 0.51 -0.0 387 + GFF7132 0.51 -1.9 388 - GFF7132 0.51 +1.0 388 - GFF7132 0.51 -0.0 388 - GFF7132 0.51 +1.0 388 - GFF7132 0.51 -0.1 388 - GFF7132 0.51 -2.0 396 + GFF7132 0.52 -0.0 396 + GFF7132 0.52 +0.2 396 + GFF7132 0.52 +0.2 396 + GFF7132 0.52 -0.5 396 + GFF7132 0.52 -0.0 396 + GFF7132 0.52 -3.1 396 + GFF7132 0.52 -0.8 397 - GFF7132 0.52 -1.3 397 - GFF7132 0.52 -1.8 397 - GFF7132 0.52 -0.2 397 - GFF7132 0.52 -2.5 397 - GFF7132 0.52 -2.1 397 - GFF7132 0.52 +3.2 408 + GFF7132 0.53 +2.6 408 + GFF7132 0.53 +1.2 408 + GFF7132 0.53 -1.4 408 + GFF7132 0.53 +0.8 409 - GFF7132 0.53 -1.0 409 - GFF7132 0.53 -1.3 409 - GFF7132 0.53 -2.4 409 - GFF7132 0.53 -0.4 477 + GFF7132 0.62 +1.6 477 + GFF7132 0.62 -0.4 478 - GFF7132 0.63 -1.2 478 - GFF7132 0.63 -0.7 478 - GFF7132 0.63 -3.1 478 - GFF7132 0.63 -0.8 576 + GFF7132 0.75 -0.6 576 + GFF7132 0.75 -1.0 576 + GFF7132 0.75 -0.2 577 - GFF7132 0.76 +0.3 577 - GFF7132 0.76 -2.6 577 - GFF7132 0.76 +0.6 804 + -0.6 805 - -0.9 822 + -1.5 822 + -0.6 822 + -0.4 822 + -0.2 822 + +0.4 822 + -2.2 822 + +0.5 822 + -4.0 822 + -0.2 823 - -0.4 823 - -2.9 823 - -0.0 823 - -0.1 1,197 + GFF7133 0.40 -2.0 1,197 + GFF7133 0.40 -1.1 1,198 - GFF7133 0.40 +1.0 1,198 - GFF7133 0.40 +1.0 1,198 - GFF7133 0.40 +0.4 1,198 - GFF7133 0.40 -0.2 1,198 - GFF7133 0.40 -1.3 1,198 - GFF7133 0.40 +0.6 1,198 - GFF7133 0.40 -0.8 1,198 - GFF7133 0.40 +0.4 1,206 + GFF7133 0.40 +0.1 1,888 + -0.1 1,888 + +1.3 1,888 + -4.0 1,889 - +0.6 1,889 - -2.3 1,889 - -0.3 1,919 + -2.4 1,919 + +0.3 1,919 + +1.2 1,919 + -0.7 1,919 + +0.2 1,919 + +0.4 1,919 + +0.4 1,919 + +0.0 1,920 - -0.4 1,920 - -2.5 1,920 - +0.5 1,920 - +1.3 1,920 - +2.6 2,230 + GFF7134 0.20 +1.6 2,230 + GFF7134 0.20 -1.8 2,230 + GFF7134 0.20 -1.1 2,231 - GFF7134 0.20 -1.0 2,231 - GFF7134 0.20 -0.5 2,231 - GFF7134 0.20 -1.2 2,231 - GFF7134 0.20 +0.9 2,231 - GFF7134 0.20 -0.4 2,343 + GFF7134 0.28 +0.7 2,343 + GFF7134 0.28 -1.2 2,343 + GFF7134 0.28 +2.2 2,343 + GFF7134 0.28 -1.4 2,344 - GFF7134 0.28 -0.9 2,344 - GFF7134 0.28 -0.5 2,344 - GFF7134 0.28 +0.8 2,428 + GFF7134 0.34 -0.0 2,428 + GFF7134 0.34 +1.0 2,428 + GFF7134 0.34 -0.1 2,428 + GFF7134 0.34 -0.1 2,429 - GFF7134 0.34 -1.1 2,429 - GFF7134 0.34 +1.9 2,429 - GFF7134 0.34 +0.2 2,429 - GFF7134 0.34 +0.4 2,429 - GFF7134 0.34 -0.9 2,429 - GFF7134 0.34 +2.2 2,429 - GFF7134 0.34 -0.5 2,503 + GFF7134 0.39 -0.6 2,503 + GFF7134 0.39 -2.0 2,503 + GFF7134 0.39 +0.6 2,503 + GFF7134 0.39 -0.2 2,504 - GFF7134 0.39 +0.4 2,504 - GFF7134 0.39 -0.2 2,504 - GFF7134 0.39 -1.1 2,504 - GFF7134 0.39 +0.5 2,504 - GFF7134 0.39 -2.2 2,504 - GFF7134 0.39 +1.6 2,504 - GFF7134 0.39 -0.0 2,504 - GFF7134 0.39 +2.6 2,725 + GFF7134 0.54 +1.1 2,725 + GFF7134 0.54 -1.0 2,725 + GFF7134 0.54 +0.6 2,725 + GFF7134 0.54 -2.1 2,725 + GFF7134 0.54 -0.6 2,725 + GFF7134 0.54 -1.2 2,726 - GFF7134 0.54 -1.8 2,726 - GFF7134 0.54 -1.6 2,726 - GFF7134 0.54 -0.1 2,726 - GFF7134 0.54 +0.1
Or see this region's nucleotide sequence