Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7100 and GFF7101 are separated by 2 nucleotides GFF7101 and GFF7102 are separated by 33 nucleotides GFF7102 and GFF7103 overlap by 4 nucleotides GFF7103 and GFF7104 overlap by 4 nucleotides
GFF7100 - similar to protocatechuate 4,5-dioxygenase beta chain, at 18,703 to 19,521
GFF7100
GFF7101 - hypothetical protein, at 19,524 to 19,850
GFF7101
GFF7102 - 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase (EC 1.2.1.60), at 19,884 to 21,350
GFF7102
GFF7103 - 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-), at 21,347 to 22,096
GFF7103
GFF7104 - 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68), at 22,093 to 22,743
GFF7104
Position (kb) 19
20
21
22 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 19.212 kb on + strand, within GFF7100 at 19.295 kb on + strand, within GFF7100 at 19.296 kb on - strand, within GFF7100 at 19.296 kb on - strand, within GFF7100 at 19.430 kb on + strand, within GFF7100 at 19.431 kb on - strand, within GFF7100 at 19.431 kb on - strand, within GFF7100 at 19.431 kb on - strand, within GFF7100 at 19.525 kb on + strand at 19.526 kb on - strand at 19.526 kb on - strand at 19.591 kb on + strand, within GFF7101 at 19.592 kb on - strand, within GFF7101 at 19.624 kb on + strand, within GFF7101 at 19.624 kb on + strand, within GFF7101 at 19.624 kb on + strand, within GFF7101 at 19.625 kb on - strand, within GFF7101 at 19.625 kb on - strand, within GFF7101 at 19.625 kb on - strand, within GFF7101 at 19.625 kb on - strand, within GFF7101 at 19.665 kb on + strand, within GFF7101 at 19.666 kb on - strand, within GFF7101 at 19.666 kb on - strand, within GFF7101 at 19.666 kb on - strand, within GFF7101 at 19.693 kb on + strand, within GFF7101 at 19.693 kb on + strand, within GFF7101 at 19.694 kb on - strand, within GFF7101 at 19.694 kb on - strand, within GFF7101 at 19.694 kb on - strand, within GFF7101 at 19.694 kb on - strand, within GFF7101 at 19.694 kb on - strand, within GFF7101 at 19.694 kb on - strand, within GFF7101 at 19.717 kb on + strand, within GFF7101 at 19.730 kb on - strand, within GFF7101 at 19.751 kb on - strand, within GFF7101 at 19.835 kb on + strand at 19.836 kb on - strand at 19.840 kb on + strand at 19.840 kb on + strand at 19.840 kb on + strand at 19.840 kb on + strand at 19.841 kb on - strand at 19.841 kb on - strand at 19.841 kb on - strand at 19.841 kb on - strand at 19.958 kb on - strand at 19.958 kb on - strand at 19.958 kb on - strand at 19.958 kb on - strand at 19.958 kb on - strand at 19.958 kb on - strand at 20.113 kb on + strand, within GFF7102 at 20.113 kb on + strand, within GFF7102 at 20.129 kb on - strand, within GFF7102 at 20.353 kb on + strand, within GFF7102 at 20.353 kb on + strand, within GFF7102 at 20.354 kb on - strand, within GFF7102 at 20.354 kb on - strand, within GFF7102 at 20.354 kb on - strand, within GFF7102 at 20.354 kb on - strand, within GFF7102 at 20.476 kb on + strand, within GFF7102 at 20.654 kb on + strand, within GFF7102 at 20.953 kb on + strand, within GFF7102 at 20.953 kb on + strand, within GFF7102 at 20.954 kb on - strand, within GFF7102 at 20.954 kb on - strand, within GFF7102 at 20.954 kb on - strand, within GFF7102 at 20.954 kb on - strand, within GFF7102 at 20.977 kb on + strand, within GFF7102 at 20.977 kb on + strand, within GFF7102 at 21.016 kb on + strand, within GFF7102 at 21.016 kb on + strand, within GFF7102 at 21.017 kb on - strand, within GFF7102 at 21.017 kb on - strand, within GFF7102 at 21.066 kb on + strand, within GFF7102 at 21.066 kb on + strand, within GFF7102 at 21.066 kb on + strand, within GFF7102 at 21.066 kb on + strand, within GFF7102 at 21.066 kb on + strand, within GFF7102 at 21.066 kb on + strand, within GFF7102 at 21.067 kb on - strand, within GFF7102 at 21.067 kb on - strand, within GFF7102 at 21.067 kb on - strand, within GFF7102 at 21.067 kb on - strand, within GFF7102 at 21.292 kb on + strand at 21.292 kb on + strand at 21.293 kb on - strand at 21.486 kb on + strand, within GFF7103 at 21.487 kb on - strand, within GFF7103 at 21.667 kb on - strand, within GFF7103 at 21.681 kb on + strand, within GFF7103 at 21.696 kb on + strand, within GFF7103 at 21.697 kb on - strand, within GFF7103 at 21.726 kb on + strand, within GFF7103 at 21.726 kb on + strand, within GFF7103 at 21.726 kb on + strand, within GFF7103 at 21.726 kb on + strand, within GFF7103 at 21.726 kb on + strand, within GFF7103 at 21.727 kb on - strand, within GFF7103 at 21.727 kb on - strand, within GFF7103 at 21.727 kb on - strand, within GFF7103 at 21.727 kb on - strand, within GFF7103 at 21.727 kb on - strand, within GFF7103 at 21.727 kb on - strand, within GFF7103 at 21.727 kb on - strand, within GFF7103 at 21.727 kb on - strand, within GFF7103 at 21.727 kb on - strand, within GFF7103 at 21.732 kb on + strand, within GFF7103 at 21.732 kb on + strand, within GFF7103 at 21.732 kb on + strand, within GFF7103 at 21.732 kb on + strand, within GFF7103 at 21.732 kb on + strand, within GFF7103 at 21.732 kb on + strand, within GFF7103 at 21.733 kb on - strand, within GFF7103 at 21.733 kb on - strand, within GFF7103 at 21.733 kb on - strand, within GFF7103 at 21.733 kb on - strand, within GFF7103 at 21.733 kb on - strand, within GFF7103 at 21.795 kb on + strand, within GFF7103 at 21.796 kb on - strand, within GFF7103 at 21.796 kb on - strand, within GFF7103 at 21.796 kb on - strand, within GFF7103 at 21.804 kb on + strand, within GFF7103 at 21.804 kb on + strand, within GFF7103 at 21.804 kb on + strand, within GFF7103 at 21.804 kb on + strand, within GFF7103 at 21.804 kb on + strand, within GFF7103 at 21.804 kb on + strand, within GFF7103 at 21.804 kb on + strand, within GFF7103 at 21.804 kb on + strand, within GFF7103 at 21.804 kb on + strand, within GFF7103 at 21.804 kb on + strand, within GFF7103 at 21.804 kb on + strand, within GFF7103 at 21.804 kb on + strand, within GFF7103 at 21.804 kb on + strand, within GFF7103 at 21.804 kb on + strand, within GFF7103 at 21.805 kb on - strand, within GFF7103 at 21.805 kb on - strand, within GFF7103 at 21.805 kb on - strand, within GFF7103 at 21.805 kb on - strand, within GFF7103 at 21.805 kb on - strand, within GFF7103 at 21.805 kb on - strand, within GFF7103 at 21.805 kb on - strand, within GFF7103 at 21.805 kb on - strand, within GFF7103 at 21.805 kb on - strand, within GFF7103 at 21.805 kb on - strand, within GFF7103 at 21.805 kb on - strand, within GFF7103 at 21.805 kb on - strand, within GFF7103 at 21.924 kb on + strand, within GFF7103 at 21.924 kb on + strand, within GFF7103 at 21.925 kb on - strand, within GFF7103 at 21.925 kb on - strand, within GFF7103 at 21.925 kb on - strand, within GFF7103 at 21.925 kb on - strand, within GFF7103 at 21.925 kb on - strand, within GFF7103 at 21.925 kb on - strand, within GFF7103 at 22.203 kb on + strand, within GFF7104 at 22.334 kb on - strand, within GFF7104
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 19,212 + GFF7100 0.62 +0.7 19,295 + GFF7100 0.72 -0.6 19,296 - GFF7100 0.72 -0.6 19,296 - GFF7100 0.72 +1.6 19,430 + GFF7100 0.89 +1.8 19,431 - GFF7100 0.89 -1.6 19,431 - GFF7100 0.89 +1.6 19,431 - GFF7100 0.89 +1.6 19,525 + +0.3 19,526 - +0.0 19,526 - -1.8 19,591 + GFF7101 0.20 +0.3 19,592 - GFF7101 0.21 +1.4 19,624 + GFF7101 0.31 +0.3 19,624 + GFF7101 0.31 +0.3 19,624 + GFF7101 0.31 -0.8 19,625 - GFF7101 0.31 -1.2 19,625 - GFF7101 0.31 +0.9 19,625 - GFF7101 0.31 +0.0 19,625 - GFF7101 0.31 -2.7 19,665 + GFF7101 0.43 -1.2 19,666 - GFF7101 0.43 -0.5 19,666 - GFF7101 0.43 -0.7 19,666 - GFF7101 0.43 -3.5 19,693 + GFF7101 0.52 +0.8 19,693 + GFF7101 0.52 -0.0 19,694 - GFF7101 0.52 -2.4 19,694 - GFF7101 0.52 -1.9 19,694 - GFF7101 0.52 +0.1 19,694 - GFF7101 0.52 -2.6 19,694 - GFF7101 0.52 -0.0 19,694 - GFF7101 0.52 +0.8 19,717 + GFF7101 0.59 +0.7 19,730 - GFF7101 0.63 -0.4 19,751 - GFF7101 0.69 +0.3 19,835 + -1.6 19,836 - +1.9 19,840 + -0.9 19,840 + -0.6 19,840 + +0.1 19,840 + +2.2 19,841 - -0.6 19,841 - +0.6 19,841 - +2.6 19,841 - +2.4 19,958 - -3.5 19,958 - -1.3 19,958 - -2.3 19,958 - +1.6 19,958 - -0.6 19,958 - -0.8 20,113 + GFF7102 0.16 +0.5 20,113 + GFF7102 0.16 +3.4 20,129 - GFF7102 0.17 -1.4 20,353 + GFF7102 0.32 +0.2 20,353 + GFF7102 0.32 -0.6 20,354 - GFF7102 0.32 +0.7 20,354 - GFF7102 0.32 -1.1 20,354 - GFF7102 0.32 +0.1 20,354 - GFF7102 0.32 -2.6 20,476 + GFF7102 0.40 -1.0 20,654 + GFF7102 0.52 +0.2 20,953 + GFF7102 0.73 +3.9 20,953 + GFF7102 0.73 -0.5 20,954 - GFF7102 0.73 -0.4 20,954 - GFF7102 0.73 -1.4 20,954 - GFF7102 0.73 +0.1 20,954 - GFF7102 0.73 +1.3 20,977 + GFF7102 0.75 -1.7 20,977 + GFF7102 0.75 -1.0 21,016 + GFF7102 0.77 -0.2 21,016 + GFF7102 0.77 +1.6 21,017 - GFF7102 0.77 -1.9 21,017 - GFF7102 0.77 -1.1 21,066 + GFF7102 0.81 +1.2 21,066 + GFF7102 0.81 -1.0 21,066 + GFF7102 0.81 +0.4 21,066 + GFF7102 0.81 -2.6 21,066 + GFF7102 0.81 -2.0 21,066 + GFF7102 0.81 -1.4 21,067 - GFF7102 0.81 -2.0 21,067 - GFF7102 0.81 -1.8 21,067 - GFF7102 0.81 -2.8 21,067 - GFF7102 0.81 +0.0 21,292 + -1.2 21,292 + -1.4 21,293 - +1.5 21,486 + GFF7103 0.19 -0.2 21,487 - GFF7103 0.19 -1.2 21,667 - GFF7103 0.43 +0.3 21,681 + GFF7103 0.45 -0.3 21,696 + GFF7103 0.47 -1.6 21,697 - GFF7103 0.47 -2.5 21,726 + GFF7103 0.51 -0.3 21,726 + GFF7103 0.51 -4.0 21,726 + GFF7103 0.51 -0.4 21,726 + GFF7103 0.51 +1.3 21,726 + GFF7103 0.51 -3.1 21,727 - GFF7103 0.51 +0.0 21,727 - GFF7103 0.51 -1.1 21,727 - GFF7103 0.51 -2.6 21,727 - GFF7103 0.51 -1.0 21,727 - GFF7103 0.51 +0.1 21,727 - GFF7103 0.51 +1.0 21,727 - GFF7103 0.51 -1.2 21,727 - GFF7103 0.51 +0.1 21,727 - GFF7103 0.51 +1.1 21,732 + GFF7103 0.51 +0.6 21,732 + GFF7103 0.51 -3.7 21,732 + GFF7103 0.51 -0.1 21,732 + GFF7103 0.51 -0.2 21,732 + GFF7103 0.51 +0.6 21,732 + GFF7103 0.51 -1.5 21,733 - GFF7103 0.51 +0.5 21,733 - GFF7103 0.51 +0.0 21,733 - GFF7103 0.51 -0.1 21,733 - GFF7103 0.51 +0.3 21,733 - GFF7103 0.51 +2.6 21,795 + GFF7103 0.60 +0.0 21,796 - GFF7103 0.60 -2.9 21,796 - GFF7103 0.60 -1.2 21,796 - GFF7103 0.60 -1.0 21,804 + GFF7103 0.61 +0.6 21,804 + GFF7103 0.61 -1.9 21,804 + GFF7103 0.61 -0.5 21,804 + GFF7103 0.61 +0.1 21,804 + GFF7103 0.61 -2.7 21,804 + GFF7103 0.61 +0.0 21,804 + GFF7103 0.61 +0.9 21,804 + GFF7103 0.61 +1.2 21,804 + GFF7103 0.61 -2.0 21,804 + GFF7103 0.61 -2.1 21,804 + GFF7103 0.61 -2.4 21,804 + GFF7103 0.61 -0.0 21,804 + GFF7103 0.61 -0.9 21,804 + GFF7103 0.61 +1.0 21,805 - GFF7103 0.61 +0.5 21,805 - GFF7103 0.61 +0.7 21,805 - GFF7103 0.61 -0.2 21,805 - GFF7103 0.61 -1.7 21,805 - GFF7103 0.61 +0.3 21,805 - GFF7103 0.61 +0.5 21,805 - GFF7103 0.61 -0.8 21,805 - GFF7103 0.61 -1.6 21,805 - GFF7103 0.61 +1.4 21,805 - GFF7103 0.61 +1.6 21,805 - GFF7103 0.61 -0.3 21,805 - GFF7103 0.61 -1.4 21,924 + GFF7103 0.77 -0.0 21,924 + GFF7103 0.77 +0.2 21,925 - GFF7103 0.77 +2.6 21,925 - GFF7103 0.77 -1.1 21,925 - GFF7103 0.77 +0.6 21,925 - GFF7103 0.77 -0.2 21,925 - GFF7103 0.77 -1.9 21,925 - GFF7103 0.77 -0.8 22,203 + GFF7104 0.17 +0.7 22,334 - GFF7104 0.37 -1.2
Or see this region's nucleotide sequence