Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7099 and GFF7100 are separated by 1 nucleotides GFF7100 and GFF7101 are separated by 2 nucleotides GFF7101 and GFF7102 are separated by 33 nucleotides
GFF7099 - 5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC 5.3.3.10), at 18,270 to 18,701
GFF7099
GFF7100 - similar to protocatechuate 4,5-dioxygenase beta chain, at 18,703 to 19,521
GFF7100
GFF7101 - hypothetical protein, at 19,524 to 19,850
GFF7101
GFF7102 - 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase (EC 1.2.1.60), at 19,884 to 21,350
GFF7102
Position (kb) 19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 18.557 kb on - strand, within GFF7099 at 18.557 kb on - strand, within GFF7099 at 18.679 kb on + strand at 18.679 kb on + strand at 18.866 kb on + strand, within GFF7100 at 18.866 kb on + strand, within GFF7100 at 18.867 kb on - strand, within GFF7100 at 19.212 kb on + strand, within GFF7100 at 19.295 kb on + strand, within GFF7100 at 19.296 kb on - strand, within GFF7100 at 19.296 kb on - strand, within GFF7100 at 19.430 kb on + strand, within GFF7100 at 19.431 kb on - strand, within GFF7100 at 19.431 kb on - strand, within GFF7100 at 19.431 kb on - strand, within GFF7100 at 19.525 kb on + strand at 19.526 kb on - strand at 19.526 kb on - strand at 19.591 kb on + strand, within GFF7101 at 19.592 kb on - strand, within GFF7101 at 19.624 kb on + strand, within GFF7101 at 19.624 kb on + strand, within GFF7101 at 19.624 kb on + strand, within GFF7101 at 19.625 kb on - strand, within GFF7101 at 19.625 kb on - strand, within GFF7101 at 19.625 kb on - strand, within GFF7101 at 19.625 kb on - strand, within GFF7101 at 19.665 kb on + strand, within GFF7101 at 19.666 kb on - strand, within GFF7101 at 19.666 kb on - strand, within GFF7101 at 19.666 kb on - strand, within GFF7101 at 19.693 kb on + strand, within GFF7101 at 19.693 kb on + strand, within GFF7101 at 19.694 kb on - strand, within GFF7101 at 19.694 kb on - strand, within GFF7101 at 19.694 kb on - strand, within GFF7101 at 19.694 kb on - strand, within GFF7101 at 19.694 kb on - strand, within GFF7101 at 19.694 kb on - strand, within GFF7101 at 19.717 kb on + strand, within GFF7101 at 19.730 kb on - strand, within GFF7101 at 19.751 kb on - strand, within GFF7101 at 19.835 kb on + strand at 19.836 kb on - strand at 19.840 kb on + strand at 19.840 kb on + strand at 19.840 kb on + strand at 19.840 kb on + strand at 19.841 kb on - strand at 19.841 kb on - strand at 19.841 kb on - strand at 19.841 kb on - strand at 19.958 kb on - strand at 19.958 kb on - strand at 19.958 kb on - strand at 19.958 kb on - strand at 19.958 kb on - strand at 19.958 kb on - strand at 20.113 kb on + strand, within GFF7102 at 20.113 kb on + strand, within GFF7102 at 20.129 kb on - strand, within GFF7102 at 20.353 kb on + strand, within GFF7102 at 20.353 kb on + strand, within GFF7102 at 20.354 kb on - strand, within GFF7102 at 20.354 kb on - strand, within GFF7102 at 20.354 kb on - strand, within GFF7102 at 20.354 kb on - strand, within GFF7102 at 20.476 kb on + strand, within GFF7102 at 20.654 kb on + strand, within GFF7102
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 18,557 - GFF7099 0.66 +0.3 18,557 - GFF7099 0.66 +2.0 18,679 + +0.1 18,679 + +0.7 18,866 + GFF7100 0.20 -0.9 18,866 + GFF7100 0.20 +0.6 18,867 - GFF7100 0.20 +3.8 19,212 + GFF7100 0.62 +0.7 19,295 + GFF7100 0.72 -0.6 19,296 - GFF7100 0.72 -0.6 19,296 - GFF7100 0.72 +1.6 19,430 + GFF7100 0.89 +1.8 19,431 - GFF7100 0.89 -1.6 19,431 - GFF7100 0.89 +1.6 19,431 - GFF7100 0.89 +1.6 19,525 + +0.3 19,526 - +0.0 19,526 - -1.8 19,591 + GFF7101 0.20 +0.3 19,592 - GFF7101 0.21 +1.4 19,624 + GFF7101 0.31 +0.3 19,624 + GFF7101 0.31 +0.3 19,624 + GFF7101 0.31 -0.8 19,625 - GFF7101 0.31 -1.2 19,625 - GFF7101 0.31 +0.9 19,625 - GFF7101 0.31 +0.0 19,625 - GFF7101 0.31 -2.7 19,665 + GFF7101 0.43 -1.2 19,666 - GFF7101 0.43 -0.5 19,666 - GFF7101 0.43 -0.7 19,666 - GFF7101 0.43 -3.5 19,693 + GFF7101 0.52 +0.8 19,693 + GFF7101 0.52 -0.0 19,694 - GFF7101 0.52 -2.4 19,694 - GFF7101 0.52 -1.9 19,694 - GFF7101 0.52 +0.1 19,694 - GFF7101 0.52 -2.6 19,694 - GFF7101 0.52 -0.0 19,694 - GFF7101 0.52 +0.8 19,717 + GFF7101 0.59 +0.7 19,730 - GFF7101 0.63 -0.4 19,751 - GFF7101 0.69 +0.3 19,835 + -1.6 19,836 - +1.9 19,840 + -0.9 19,840 + -0.6 19,840 + +0.1 19,840 + +2.2 19,841 - -0.6 19,841 - +0.6 19,841 - +2.6 19,841 - +2.4 19,958 - -3.5 19,958 - -1.3 19,958 - -2.3 19,958 - +1.6 19,958 - -0.6 19,958 - -0.8 20,113 + GFF7102 0.16 +0.5 20,113 + GFF7102 0.16 +3.4 20,129 - GFF7102 0.17 -1.4 20,353 + GFF7102 0.32 +0.2 20,353 + GFF7102 0.32 -0.6 20,354 - GFF7102 0.32 +0.7 20,354 - GFF7102 0.32 -1.1 20,354 - GFF7102 0.32 +0.1 20,354 - GFF7102 0.32 -2.6 20,476 + GFF7102 0.40 -1.0 20,654 + GFF7102 0.52 +0.2
Or see this region's nucleotide sequence