Strain Fitness in Variovorax sp. SCN45 around GFF7064

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7062 and GFF7063 are separated by 13 nucleotidesGFF7063 and GFF7064 are separated by 222 nucleotidesGFF7064 and GFF7065 are separated by 68 nucleotidesGFF7065 and GFF7066 overlap by 4 nucleotidesGFF7066 and GFF7067 are separated by 132 nucleotides GFF7062 - probable carboxylesterase, at 21,355 to 22,017 GFF7062 GFF7063 - Antibiotic biosynthesis monooxygenase, at 22,031 to 22,348 GFF7063 GFF7064 - Glutamate--cysteine ligase (EC 6.3.2.2), at 22,571 to 24,076 GFF7064 GFF7065 - no description, at 24,145 to 24,279 GFF7065 GFF7066 - Two-component transcriptional response regulator receiver domain, at 24,276 to 24,656 GFF7066 GFF7067 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 24,789 to 25,718 GFF7067 Position (kb) 22 23 24 25Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 21.778 kb on + strand, within GFF7062at 21.779 kb on - strand, within GFF7062at 21.922 kb on + strand, within GFF7062at 21.922 kb on + strand, within GFF7062at 21.922 kb on + strand, within GFF7062at 21.922 kb on + strand, within GFF7062at 21.923 kb on - strand, within GFF7062at 21.943 kb on + strand, within GFF7062at 21.943 kb on + strand, within GFF7062at 21.943 kb on + strand, within GFF7062at 21.944 kb on - strand, within GFF7062at 21.944 kb on - strand, within GFF7062at 22.301 kb on + strand, within GFF7063at 22.302 kb on - strand, within GFF7063at 22.302 kb on - strand, within GFF7063at 22.388 kb on + strandat 22.388 kb on + strandat 22.388 kb on + strandat 22.474 kb on + strandat 22.474 kb on + strandat 22.474 kb on + strandat 22.474 kb on + strandat 22.474 kb on + strandat 22.475 kb on - strandat 22.475 kb on - strandat 22.475 kb on - strandat 22.475 kb on - strandat 22.475 kb on - strandat 22.475 kb on - strandat 22.475 kb on - strandat 22.507 kb on + strandat 22.507 kb on + strandat 22.507 kb on + strandat 22.507 kb on + strandat 22.508 kb on - strandat 22.508 kb on - strandat 22.508 kb on - strandat 22.508 kb on - strandat 22.513 kb on + strandat 22.513 kb on + strandat 22.513 kb on + strandat 22.513 kb on + strandat 22.513 kb on + strandat 22.513 kb on + strandat 22.513 kb on + strandat 22.514 kb on - strandat 22.514 kb on - strandat 22.514 kb on - strandat 22.514 kb on - strandat 22.644 kb on + strandat 22.645 kb on - strandat 22.778 kb on + strand, within GFF7064at 22.908 kb on - strand, within GFF7064at 22.967 kb on + strand, within GFF7064at 22.967 kb on + strand, within GFF7064at 22.967 kb on + strand, within GFF7064at 22.967 kb on + strand, within GFF7064at 22.967 kb on + strand, within GFF7064at 22.968 kb on - strand, within GFF7064at 22.968 kb on - strand, within GFF7064at 22.968 kb on - strand, within GFF7064at 22.968 kb on - strand, within GFF7064at 23.003 kb on + strand, within GFF7064at 23.003 kb on + strand, within GFF7064at 23.003 kb on + strand, within GFF7064at 23.003 kb on + strand, within GFF7064at 23.003 kb on + strand, within GFF7064at 23.003 kb on + strand, within GFF7064at 23.004 kb on - strand, within GFF7064at 23.004 kb on - strand, within GFF7064at 23.004 kb on - strand, within GFF7064at 23.051 kb on + strand, within GFF7064at 23.051 kb on + strand, within GFF7064at 23.051 kb on + strand, within GFF7064at 23.051 kb on + strand, within GFF7064at 23.051 kb on + strand, within GFF7064at 23.051 kb on + strand, within GFF7064at 23.051 kb on + strand, within GFF7064at 23.052 kb on - strand, within GFF7064at 23.052 kb on - strand, within GFF7064at 23.052 kb on - strand, within GFF7064at 23.052 kb on - strand, within GFF7064at 23.180 kb on + strand, within GFF7064at 23.216 kb on + strand, within GFF7064at 23.216 kb on + strand, within GFF7064at 23.216 kb on + strand, within GFF7064at 23.216 kb on + strand, within GFF7064at 23.216 kb on + strand, within GFF7064at 23.217 kb on - strand, within GFF7064at 23.217 kb on - strand, within GFF7064at 23.217 kb on - strand, within GFF7064at 23.217 kb on - strand, within GFF7064at 23.217 kb on - strand, within GFF7064at 23.217 kb on - strand, within GFF7064at 23.217 kb on - strand, within GFF7064at 23.279 kb on + strand, within GFF7064at 23.279 kb on + strand, within GFF7064at 23.280 kb on - strand, within GFF7064at 23.315 kb on + strand, within GFF7064at 23.316 kb on - strand, within GFF7064at 23.316 kb on - strand, within GFF7064at 23.316 kb on - strand, within GFF7064at 23.360 kb on + strand, within GFF7064at 23.360 kb on + strand, within GFF7064at 23.360 kb on + strand, within GFF7064at 23.360 kb on + strand, within GFF7064at 23.360 kb on + strand, within GFF7064at 23.360 kb on + strand, within GFF7064at 23.361 kb on - strand, within GFF7064at 23.361 kb on - strand, within GFF7064at 23.438 kb on + strand, within GFF7064at 23.439 kb on - strand, within GFF7064at 23.439 kb on - strand, within GFF7064at 23.843 kb on + strand, within GFF7064at 24.005 kb on + strandat 24.005 kb on + strandat 24.005 kb on + strandat 24.005 kb on + strandat 24.006 kb on - strandat 24.006 kb on - strandat 24.017 kb on + strandat 24.017 kb on + strandat 24.017 kb on + strandat 24.017 kb on + strandat 24.018 kb on - strandat 24.018 kb on - strandat 24.018 kb on - strandat 24.018 kb on - strandat 24.018 kb on - strandat 24.018 kb on - strandat 24.018 kb on - strandat 24.018 kb on - strandat 24.018 kb on - strandat 24.018 kb on - strandat 24.018 kb on - strandat 24.018 kb on - strandat 24.074 kb on + strandat 24.075 kb on - strandat 24.151 kb on + strandat 24.151 kb on + strandat 24.152 kb on - strandat 24.152 kb on - strandat 24.241 kb on - strand, within GFF7065at 24.291 kb on + strandat 24.291 kb on + strandat 24.292 kb on - strandat 24.292 kb on - strandat 24.534 kb on + strand, within GFF7066at 24.534 kb on + strand, within GFF7066at 24.534 kb on + strand, within GFF7066at 24.535 kb on - strand, within GFF7066at 24.535 kb on - strand, within GFF7066at 24.535 kb on - strand, within GFF7066at 24.535 kb on - strand, within GFF7066at 24.535 kb on - strand, within GFF7066at 24.535 kb on - strand, within GFF7066at 24.535 kb on - strand, within GFF7066at 24.624 kb on + strandat 24.624 kb on + strandat 24.625 kb on - strandat 24.770 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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21,778 + GFF7062 0.64 -0.0
21,779 - GFF7062 0.64 -0.3
21,922 + GFF7062 0.86 -1.2
21,922 + GFF7062 0.86 +1.0
21,922 + GFF7062 0.86 -1.6
21,922 + GFF7062 0.86 +0.6
21,923 - GFF7062 0.86 +0.4
21,943 + GFF7062 0.89 -3.1
21,943 + GFF7062 0.89 -0.3
21,943 + GFF7062 0.89 -1.7
21,944 - GFF7062 0.89 +0.4
21,944 - GFF7062 0.89 -0.8
22,301 + GFF7063 0.85 -2.1
22,302 - GFF7063 0.85 +1.0
22,302 - GFF7063 0.85 +1.9
22,388 + -1.6
22,388 + +1.2
22,388 + +1.9
22,474 + +1.6
22,474 + -0.3
22,474 + -0.8
22,474 + +1.0
22,474 + -0.6
22,475 - -0.8
22,475 - -0.3
22,475 - -0.6
22,475 - +1.7
22,475 - -0.2
22,475 - -0.2
22,475 - -0.7
22,507 + -0.8
22,507 + -0.1
22,507 + -2.5
22,507 + -1.6
22,508 - +0.3
22,508 - -0.3
22,508 - -2.9
22,508 - -0.2
22,513 + +0.7
22,513 + -1.0
22,513 + -0.6
22,513 + -1.6
22,513 + +2.0
22,513 + -1.7
22,513 + -1.0
22,514 - -0.0
22,514 - -1.0
22,514 - -0.6
22,514 - -1.4
22,644 + -2.8
22,645 - +2.0
22,778 + GFF7064 0.14 -2.2
22,908 - GFF7064 0.22 -1.7
22,967 + GFF7064 0.26 -1.2
22,967 + GFF7064 0.26 -1.9
22,967 + GFF7064 0.26 -1.7
22,967 + GFF7064 0.26 -3.2
22,967 + GFF7064 0.26 -2.1
22,968 - GFF7064 0.26 -2.6
22,968 - GFF7064 0.26 -2.6
22,968 - GFF7064 0.26 -0.0
22,968 - GFF7064 0.26 -1.9
23,003 + GFF7064 0.29 -1.4
23,003 + GFF7064 0.29 -2.6
23,003 + GFF7064 0.29 -0.3
23,003 + GFF7064 0.29 -1.2
23,003 + GFF7064 0.29 +0.4
23,003 + GFF7064 0.29 -2.2
23,004 - GFF7064 0.29 +0.3
23,004 - GFF7064 0.29 -2.4
23,004 - GFF7064 0.29 -2.0
23,051 + GFF7064 0.32 +1.2
23,051 + GFF7064 0.32 -1.3
23,051 + GFF7064 0.32 -2.0
23,051 + GFF7064 0.32 -2.0
23,051 + GFF7064 0.32 -2.5
23,051 + GFF7064 0.32 -0.3
23,051 + GFF7064 0.32 -2.4
23,052 - GFF7064 0.32 -2.3
23,052 - GFF7064 0.32 -1.0
23,052 - GFF7064 0.32 +0.1
23,052 - GFF7064 0.32 -2.5
23,180 + GFF7064 0.40 -2.0
23,216 + GFF7064 0.43 -1.1
23,216 + GFF7064 0.43 -2.9
23,216 + GFF7064 0.43 -2.8
23,216 + GFF7064 0.43 -0.6
23,216 + GFF7064 0.43 -0.6
23,217 - GFF7064 0.43 -2.9
23,217 - GFF7064 0.43 -1.6
23,217 - GFF7064 0.43 -3.1
23,217 - GFF7064 0.43 -1.8
23,217 - GFF7064 0.43 -2.2
23,217 - GFF7064 0.43 -0.0
23,217 - GFF7064 0.43 -2.2
23,279 + GFF7064 0.47 -0.0
23,279 + GFF7064 0.47 +1.0
23,280 - GFF7064 0.47 -2.5
23,315 + GFF7064 0.49 -0.0
23,316 - GFF7064 0.49 -2.2
23,316 - GFF7064 0.49 -1.9
23,316 - GFF7064 0.49 -2.2
23,360 + GFF7064 0.52 -2.3
23,360 + GFF7064 0.52 -1.5
23,360 + GFF7064 0.52 +0.6
23,360 + GFF7064 0.52 -2.3
23,360 + GFF7064 0.52 -0.6
23,360 + GFF7064 0.52 -2.7
23,361 - GFF7064 0.52 -0.3
23,361 - GFF7064 0.52 +0.4
23,438 + GFF7064 0.58 -1.5
23,439 - GFF7064 0.58 -2.2
23,439 - GFF7064 0.58 -1.0
23,843 + GFF7064 0.84 -1.0
24,005 + +1.2
24,005 + -0.8
24,005 + +0.4
24,005 + -1.3
24,006 - +1.8
24,006 - -0.3
24,017 + +0.7
24,017 + -0.3
24,017 + +0.8
24,017 + +0.4
24,018 - -2.9
24,018 - -0.1
24,018 - -0.7
24,018 - -1.7
24,018 - +0.0
24,018 - -0.4
24,018 - -2.5
24,018 - +0.4
24,018 - -1.3
24,018 - +1.2
24,018 - -0.9
24,018 - -1.8
24,074 + -1.6
24,075 - +0.0
24,151 + +0.5
24,151 + +0.8
24,152 - -0.0
24,152 - -1.4
24,241 - GFF7065 0.71 -1.3
24,291 + -1.2
24,291 + +1.2
24,292 - -0.9
24,292 - +2.0
24,534 + GFF7066 0.68 -0.4
24,534 + GFF7066 0.68 -3.6
24,534 + GFF7066 0.68 -1.9
24,535 - GFF7066 0.68 +2.9
24,535 - GFF7066 0.68 +2.6
24,535 - GFF7066 0.68 -2.1
24,535 - GFF7066 0.68 -2.5
24,535 - GFF7066 0.68 +0.4
24,535 - GFF7066 0.68 -0.1
24,535 - GFF7066 0.68 +0.4
24,624 + -1.9
24,624 + -0.0
24,625 - -1.2
24,770 - +0.8

Or see this region's nucleotide sequence